Evidence map›Paper›PMID 38655200›Full record

ArticleiScience2024

Sequential trypsin and ProAlanase digestions unearth immunological protein biomarkers shrouded by skeletal collagen.

Shevan Wilkin, Liam T Lanigan, Nuria Montes, Mukul Sharma, Charlotte Avanzi, Donikë Sejdiu, Kerttu Majander, Saskia Pfrengle, Yun Chiang, Laura Kunz and 7 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
40.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 9 countries.

Shevan WilkinInstitute of Evolutionary Medicine, University of Zurich, Zurich, Switzerland.
Liam T LaniganGlobe Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Nuria MontesUnitat d'Antropologia Biològica, Departament de Biologia Animal, Biologia Vegetal i Ecologia, Universitat Autònoma de Barcelona, Barcelona, Spain.
Mukul SharmaMicrobial Pathogenesis and Genomics, National Institute of Research in Tribal Health, Jabalpur, MP, India.
Charlotte AvanziDepartment of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO, USA.
Donikë SejdiuInstitute of Evolutionary Medicine, University of Zurich, Zurich, Switzerland.
Kerttu MajanderInstitute of Evolutionary Medicine, University of Zurich, Zurich, Switzerland.
Saskia PfrengleInstitute of Evolutionary Medicine, University of Zurich, Zurich, Switzerland.
Yun ChiangGlobe Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Laura KunzFunctional Genomics Center Zurich, University of Zurich, Zurich, Switzerland.
Antje DittmannFunctional Genomics Center Zurich, University of Zurich, Zurich, Switzerland.
Frank RühliInstitute of Evolutionary Medicine, University of Zurich, Zurich, Switzerland.
Pushpendra SinghMicrobial Pathogenesis and Genomics, National Institute of Research in Tribal Health, Jabalpur, MP, India.
Maria Fontanals CollBioArCh - Department of Archaeology, University of York, York, UK.
Matthew J CollinsGlobe Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Alberto J TaurozziGlobe Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Verena J SchuenemannInstitute of Evolutionary Medicine, University of Zurich, Zurich, Switzerland.
University of Zurich · CHUniversity of Copenhagen · DKNational Institute for Research in Tribal Health · INColorado State University · USDepartment of Archaeology · LKGriffith University · AUTH Bingen University of Applied Sciences · DEUniversitat Autònoma de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study investigates the efficacy of proteomic analysis of human remains to identify active infections in the past through the detection of pathogens and the host response to infection. We advance leprosy as a case study due to the sequestering of sufferers in leprosaria and the suggestive skeletal lesions that can result from the disease. Here we present a sequential enzyme extraction protocol, using trypsin followed by ProAlanase, to reduce the abundance of collagen peptides and in so doing increase the detection of non-collagenous proteins. Through our study of five individuals from an 11th to 18th century leprosarium, as well as four from a contemporaneous non-leprosy associated cemetery in Barcelona, we show that samples from 2 out of 5 leprosarium individuals extracted with the sequential digestion methodology contain numerous host immune proteins associated with modern leprosy. In contrast, individuals from the non-leprosy associated cemetery and all samples extracted with a trypsin-only protocol did not. Through this study, we advance a palaeoproteomic methodology to gain insights into the health of archaeological individuals and take a step toward a proteomics-based method to study immune responses in past populations.

Indexed as

BiochemistryBiochemistry applicationsBiochemistry methodsMedical biochemistryProteomics

Identifiers

PMID38655200
PMCPMC11035369
OpenAlexW4393857748

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.