Evidence map›Paper›PMID 38655080›Full record

ArticleFrontiers in microbiology2024

Characterization of winged helix domain fusion endonucleases as N6-methyladenine-dependent type IV restriction systems.

Igor Helbrecht, Daniel Heiter, Weiwei Yang, Tamas Vincze, Andrew Hanneman, Thomas Lutz, Laurence Ettwiller, Matthias Bochtler, Shuang-Yong Xu

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Igor Helbrecht *New England Biolabs, Inc., Ipswich, MA, United States.
Daniel Heiter *New England Biolabs, Inc., Ipswich, MA, United States.
Weiwei YangNew England Biolabs, Inc., Ipswich, MA, United States.
Tamas VinczeNew England Biolabs, Inc., Ipswich, MA, United States.
Andrew HannemanNew England Biolabs, Inc., Ipswich, MA, United States.
Thomas LutzNew England Biolabs, Inc., Ipswich, MA, United States.
Laurence EttwillerNew England Biolabs, Inc., Ipswich, MA, United States.
Matthias BochtlerInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Shuang-Yong XuNew England Biolabs, Inc., Ipswich, MA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Winged helix (wH) domains, also termed winged helix-turn-helix (wHTH) domains, are widespread in all kingdoms of life and have diverse roles. In the context of DNA binding and DNA modification sensing, some eukaryotic wH domains are known as sensors of non-methylated CpG. In contrast, the prokaryotic wH domains in DpnI and HhiV4I act as sensors of adenine methylation in the 6mApT (N6-methyladenine, 6mA, or N6mA) context. DNA-binding modes and interactions with the probed dinucleotide are vastly different in the two cases. Here, we show that the role of the wH domain as a sensor of adenine methylation is widespread in prokaryotes. We present previously uncharacterized examples of PD-(D/E)XK-wH (FcyTI, Psp4BI), PUA-wH-HNH (HtuIII), wH-GIY-YIG (Ahi29725I, Apa233I), and PLD-wH (Aba4572I, CbaI) fusion endonucleases that sense adenine methylation in the Dam

Indexed as

genome conflictGIY-YIG endonucleaseHNH endonucleaseN6mA-dependent restriction systemPLD family endonucleasewinged helix fusion endonucleases

Identifiers

PMID38655080
PMCPMC11037411

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.