Evidence map›Paper›PMID 38654176›Full record

ArticleBMC plant biology2024

Integrated genome-wide association and transcriptomic analysis to identify receptor kinase genes to stripe rust resistance in wheat germplasm from southwestern China.

Liang Qiao, Jianfei Luo, Huiyutang Wang, Yixi Kong, Tingting Du, Peng Qin, Baoju Yang

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Liang QiaoCollege of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, China.
Jianfei LuoCollege of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, China.
Huiyutang WangCollege of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, China.
Yixi KongCollege of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, China.
Tingting DuCollege of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, China.
Peng QinCollege of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, China.
Baoju YangCollege of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, China. yangbaoju@nwsuaf.edu.cn.
Yunnan Agricultural University · CN

Funding

National Natural Science Foundation of China 32160481
6 · The paper itself

Abstract

Stripe rust of wheat, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most important diseases of wheat worldwide. Identification of new and elite Pst-resistance loci or genes has the potential to enhance overall resistance to this pathogen. Here, we conducted an integrated genome-wide association study (GWAS) and transcriptomic analysis to screen for loci associated with resistance to stripe rust in 335 accessions from Yunnan, including 311 landraces and 24 cultivars. Based on the environmental phenotype, we identified 113 protein kinases significantly associated with Pst resistance using mixed linear model (MLM) and generalized linear model (GLM) models. Transcriptomic analysis revealed that 52 of 113 protein kinases identified by GWAS were up and down regulated in response to Pst infection. Among these genes, a total of 15 receptor kinase genes were identified associated with Pst resistance. 11 candidate genes were newly discovered in Yunnan wheat germplasm. Our results revealed that resistance alleles to stripe rust were accumulated in Yunnan wheat germplasm, implying direct or indirect selection for improving stripe rust resistance in elite wheat breeding programs.

Indexed as

Disease ResistanceGenome-Wide Association StudyPlant DiseasesPucciniaTriticumBasidiomycotaChinaGene Expression ProfilingGenes, PlantPlant ProteinsProtein KinasesTranscriptomePlant ProteinsProtein KinasesGWASReceptor kinaseResistanceStripe rustTranscriptomeWheat

Identifiers

PMID38654176
PMCPMC11040869
OpenAlexW4395080612

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.