Evidence map›Paper›PMID 38653764›Full record

ArticleNature communications2024

Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to β-glucans.

Meng-Shu Hao, Scott Mazurkewich, He Li, Alma Kvammen, Srijani Saha, Salla Koskela, Annie R Inman, Masahiro Nakajima, Nobukiyo Tanaka, Hiroyuki Nakai and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Meng-Shu Hao *Division of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, 106 91, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-5442-1597
Scott Mazurkewich *Department of Life Sciences, Chalmers University of Technology, 41296, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-9238-0615
He Li *Division of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, 106 91, Stockholm, Sweden.
Alma KvammenDivision of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, 106 91, Stockholm, Sweden.
Srijani SahaDivision of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, 106 91, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-7719-1552
Salla KoskelaDivision of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, 106 91, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-7438-4030
Annie R InmanDivision of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, 106 91, Stockholm, Sweden.
Masahiro NakajimaDepartment of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan.ORCID http://orcid.org/0000-0002-3182-0859
Nobukiyo TanakaDepartment of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan.
Hiroyuki NakaiFaculty of Agriculture, Niigata University, Niigata, 950-2181, Japan.
Gisela BrändénDepartment of Chemistry and Molecular Biology, University of Gothenburg, SE-405 30, Gothenburg, Sweden.ORCID http://orcid.org/0000-0001-5615-7187
Vincent BuloneDivision of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, 106 91, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-2809-4160
Johan LarsbrinkDepartment of Life Sciences, Chalmers University of Technology, 41296, Gothenburg, Sweden.ORCID http://orcid.org/0000-0001-8386-2914
Lauren S McKeeDivision of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, 106 91, Stockholm, Sweden. mckee@kth.se.ORCID http://orcid.org/0000-0002-3372-8773

Funding

Energimyndigheten (Swedish Energy Agency) 2019-006926Svenska Forskningsrådet Formas (Swedish Research Council Formas) 2019-00389Vetenskapsrådet (Swedish Research Council) 2020-03618
6 · The paper itself

Abstract

Carbohydrate-binding modules (CBMs) are non-catalytic proteins found appended to carbohydrate-active enzymes. Soil and marine bacteria secrete such enzymes to scavenge nutrition, and they often use CBMs to improve reaction rates and retention of released sugars. Here we present a structural and functional analysis of the recently established CBM family 92. All proteins analysed bind preferentially to β-1,6-glucans. This contrasts with the diversity of predicted substrates among the enzymes attached to CBM92 domains. We present crystal structures for two proteins, and confirm by mutagenesis that tryptophan residues permit ligand binding at three distinct functional binding sites on each protein. Multivalent CBM families are uncommon, so the establishment and structural characterisation of CBM92 enriches the classification database and will facilitate functional prediction in future projects. We propose that CBM92 proteins may cross-link polysaccharides in nature, and might have use in novel strategies for enzyme immobilisation.

Indexed as

Bacterial Proteinsbeta-GlucansBinding SitesCrystallography, X-RayModels, MolecularProtein BindingBacterial Proteinsbeta-Glucans

Identifiers

PMID38653764
PMCPMC11039641

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.