Evidence map›Paper›PMID 38652013›Full record

ArticleBioTechniques2024

Rectal swab DNA collection protocol for PCR genotyping in rats.

Audrey E Kaye, Jacob W Proctor-Bonbright, Jai Y Yu

Open access · goldAbstract read
PubMed Publisher
In one paragraph

Article in BioTechniques, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Cell-Free DNA-Based Theranostics for Inflammatory Disorders.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Audrey E KayeNeuroscience Institute, University of Chicago, Chicago, IL 60637, USA.ORCID 0009-0001-8580-7975
Jacob W Proctor-BonbrightNeuroscience Institute, University of Chicago, Chicago, IL 60637, USA.
Jai Y YuNeuroscience Institute, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0003-0628-2531
University of Chicago · US

Funding

University of Chicago Neuroscience Early Stage Scientist Training ProgramR25NS117360 · NINDS · UNIVERSITY OF CHICAGO · PI MASON, PEGGY, SCHWARTZ, NANCY B · 2020 to 2024
$1.3M
NINDS NIH HHS 5R25NS117360NINDS NIH HHS R25 NS117360Whitehall Foundation 2022-12-017
6 · The paper itself

Abstract

DNA collection is essential for genotyping laboratory animals. Common collection methods require tissue amputation, causing discomfort and injury. Rectal swabbing has been proposed as an effective, minimally invasive alternative, but an evidence-backed protocol for the technique remains unavailable. This report evaluates the effects of collection parameters on the quality of PCR results and presents a protocol for genotyping a litter of rats within 3-5 h. Samples with 2-8 scrapes produced enough DNA to amplify targets up to ∼1800 bp long using PCR. Rectal swabbing produced PCR results with similar utility as ear clip samples, and results were unaffected by residual fecal matter or cell debris. The protocol enables fast, minimally invasive and repeatable genotyping using commercial PCR reagents.

Indexed as

DNAGenotyping TechniquesPolymerase Chain ReactionRectumSpecimen HandlingAnimalsGenotypeRatsDNADNA collectionDNA collection protocolgenotypingminimally invasivePCR analysispolymerase chain reactionsrectal swabrectum swabsamplingtransgenic rats

Identifiers

PMID38652013
OpenAlexW4395036897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.