Evidence map›Paper›PMID 38649690›Full record

ArticleScientific reports2024

Transcriptome and single-cell analysis reveal disulfidptosis-related modification patterns of tumor microenvironment and prognosis in osteosarcoma.

Linbang Wang, Yu Liu, Jiaojiao Tai, Xinyu Dou, Hongjuan Yang, Qiaochu Li, Jingkun Liu, Ziqiang Yan, Xiaoguang Liu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Linbang WangDepartment of Orthopaedics, Peking University Third Hospital, Beijing, People's Republic of China.
Yu LiuDepartment of Orthopaedics, Peking University Third Hospital, Beijing, People's Republic of China.
Jiaojiao TaiDepartment of Orthopedics, Honghui Hospital, Xi'an Jiaotong University, No. 555, Youyi Road, Beilin District, Xi'an, 710054, Shaanxi, People's Republic of China.
Xinyu DouDepartment of Orthopaedics, Peking University Third Hospital, Beijing, People's Republic of China.
Hongjuan YangSchool of Foreign Studies, Xi'an Medical University, Xi'an, 710054, Shaanxi, People's Republic of China.
Qiaochu LiDepartment of Orthopedic Surgery, The First Affiliated Hospital, Chongqing Medical University, Chongqing, 400016, People's Republic of China.
Jingkun LiuDepartment of Orthopedics, Honghui Hospital, Xi'an Jiaotong University, No. 555, Youyi Road, Beilin District, Xi'an, 710054, Shaanxi, People's Republic of China. 1769687234@qq.com.
Ziqiang YanDepartment of Orthopedics, Honghui Hospital, Xi'an Jiaotong University, No. 555, Youyi Road, Beilin District, Xi'an, 710054, Shaanxi, People's Republic of China. heluxue68@hotmail.com.
Xiaoguang LiuDepartment of Orthopaedics, Peking University Third Hospital, Beijing, People's Republic of China. xgliudoctor@163.com.
Peking University · CNXi'an Jiaotong University · CNFirst Affiliated Hospital of Chongqing Medical University · CNXi'an Honghui Hospital · CNXi'an Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Osteosarcoma (OS) is the most common malignant bone tumor with high pathological heterogeneity. Our study aimed to investigate disulfidptosis-related modification patterns in OS and their relationship with survival outcomes in patients with OS. We analyzed the single-cell-level expression profiles of disulfidptosis-related genes (DSRGs) in both OS microenvironment and OS subclusters, and HMGB1 was found to be crucial for intercellular regulation of OS disulfidptosis. Next, we explored the molecular clusters of OS based on DSRGs and related immune cell infiltration using transcriptome data. Subsequently, the hub genes of disulfidptosis in OS were screened by applying multiple machine models. In vitro and patient experiments validated our results. Three main disulfidptosis-related molecular clusters were defined in OS, and immune infiltration analysis suggested high immune heterogeneity between distinct clusters. The in vitro experiment confirmed decreased cell viability of OS after ACTB silencing and higher expression of ACTB in patients with lower immune scores. Our study systematically revealed the underlying relationship between disulfidptosis and OS at the single-cell level, identified disulfidptosis-related subtypes, and revealed the potential role of ACTB expression in OS disulfidptosis.

Indexed as

Bone NeoplasmsGene Expression Regulation, NeoplasticOsteosarcomaSingle-Cell AnalysisTranscriptomeTumor MicroenvironmentActinsCell Line, TumorGene Expression ProfilingHMGB1 ProteinHumansPrognosisActinsHMGB1 ProteinHMGB1 protein, humanACTBDisulfidptosisHMGB1OsteosarcomaSingle-cell analysis

Identifiers

PMID38649690
PMCPMC11035678
OpenAlexW4395003643

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.