Evidence map›Paper›PMID 38649664›Full record

ArticleEMBO reports2024

Cellular remodeling and JAK inhibition promote zygotic gene expression in the Ciona germline.

Naoyuki Ohta, Lionel Christiaen

Open access · diamondAbstract read
In one paragraph

Article in EMBO reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Naoyuki OhtaMichael Sars Centre, University of Bergen, Bergen, Norway. naoyuki.ohta@uib.no.ORCID 0000-0001-7495-7655
Lionel ChristiaenMichael Sars Centre, University of Bergen, Bergen, Norway. lionel.christiaen@uib.no.ORCID 0000-0001-5930-5667
City University of New York · USUniversity of Bergen · NO

Funding

Regulation of muscle fate specification and cell migration in cardiogenic lineageR01HL108643 · NHLBI · NEW YORK UNIVERSITY · PI MOGILNER, ALEXANDER · 2011 to 2023
$5.4M
Transcriptional control of collective cell migrationR01GM096032 · NIGMS · NEW YORK UNIVERSITY · PI CHRISTIAEN, LIONEL · 2010 to 2020
$3.0M
HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM096032NHLBI NIH HHS R01 HL108643NIGMS NIH HHS R01 GM096032
6 · The paper itself

Abstract

Transcription control is a major determinant of cell fate decisions in somatic tissues. By contrast, early germline fate specification in numerous vertebrate and invertebrate species relies extensively on RNA-level regulation, exerted on asymmetrically inherited maternal supplies, with little-to-no zygotic transcription. However delayed, a maternal-to-zygotic transition is nevertheless poised to complete the deployment of pre-gametic programs in the germline. Here, we focus on early germline specification in the tunicate Ciona to study zygotic genome activation. We first demonstrate that a peculiar cellular remodeling event excludes localized postplasmic Pem-1 mRNA, which encodes the general inhibitor of transcription. Subsequently, zygotic transcription begins in Pem-1-negative primordial germ cells (PGCs), as revealed by histochemical detection of elongating RNA Polymerase II, and nascent Mef2 transcripts. In addition, we uncover a provisional antagonism between JAK and MEK/BMPRI/GSK3 signaling, which controls the onset of zygotic gene expression, following cellular remodeling of PGCs. We propose a 2-step model for the onset of zygotic transcription in the Ciona germline and discuss the significance of germ plasm dislocation and remodeling in the context of developmental fate specification.

Indexed as

Gene Expression Regulation, DevelopmentalGerm CellsJanus KinasesZygoteAnimalsCionaCiona intestinalisSignal TransductionTranscription, GeneticJanus KinasesGermline SpecificationLobe ScissionPrimordial Germ CellsTranscription ControlTunicate

Identifiers

PMID38649664
PMCPMC11094015
OpenAlexW4394996005

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.