Evidence map›Paper›PMID 38647032›Full record

ArticleCytoskeleton (Hoboken, N.J.)2024

Prediction of the essential intermolecular contacts for side-binding of VASP on F-actin.

Fikret Aydin, Harshwardhan H Katkar, Alisha Morganthaler, Alyssa J Harker, David R Kovar, Gregory A Voth

Open access · hybridAbstract read
In one paragraph

Article in Cytoskeleton (Hoboken, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.0field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Molecular mechanism of Arp2/3 complex activation by nucleation-promoting factors and an actin monomer.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Fikret AydinDepartment of Chemistry, The James Franck Institute, and Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois, USA.
Harshwardhan H KatkarDepartment of Chemistry, The James Franck Institute, and Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois, USA.
Alisha MorganthalerDepartment of Biochemistry and Molecular Biology and Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, Illinois, USA.
Alyssa J HarkerDepartment of Biochemistry and Molecular Biology and Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, Illinois, USA.
David R KovarDepartment of Biochemistry and Molecular Biology and Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, Illinois, USA.
Gregory A VothDepartment of Chemistry, The James Franck Institute, and Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois, USA.
University of Illinois Chicago · USChicago Institute for Psychoanalysis · USUniversity of Chicago · US

Funding

Molecular And Cellular Biology Training ProgramT32GM007183 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S, RICE, PHOEBE A · 1985 to 2021
$23.9M
New Method for Biomembrane SimulationsR01GM063796 · NIGMS · UNIVERSITY OF UTAH · PI VOTH, GREGORY A. · 2001 to 2025
$6.3M
Mechanisms of Formin-Mediated Actin Filament Assembly - Renewal 01 - ResubmissionR01GM079265 · NIGMS · UNIVERSITY OF CHICAGO · PI KOVAR, DAVID R · 2007 to 2023
$4.5M
Department of Defense Army Research Office Multidisciplinary University Research Initiative W911NF1410403National Science Foundation ACI-1548562National Science Foundation Graduate Research Fellowship DGE-1144082National Science Foundation Graduate Research Fellowship DGE-1746045NIGMS NIH HHS R01 GM063796NIGMS NIH HHS R01GM063796NIGMS NIH HHS R01 GM079265NIGMS NIH HHS T32 GM007183NIH HHS R01GM079265
6 · The paper itself

Abstract

Vasodilator-stimulated phosphoprotein (VASP) family proteins play a crucial role in mediating the actin network architecture in the cytoskeleton. The Ena/VASP homology 2 (EVH2) domain in each of the four identical arms of the tetrameric VASP consists of a loading poly-Pro region, a G-actin-binding domain (GAB), and an F-actin-binding domain (FAB). Together, the poly-Pro, GAB, and FAB domains allow VASP to bind to sides of actin filaments in a bundle, and recruit profilin-G-actin to processively elongate the filaments. The atomic resolution structure of the ternary complex, consisting of the loading poly-Pro region and GAB domain of VASP with profilin-actin, has been solved over a decade ago; however, a detailed structure of the FAB-F-actin complex has not been resolved to date. Experimental insights, based on homology of the FAB domain with the C region of WASP, have been used to hypothesize that the FAB domain binds to the cleft between subdomains 1 and 3 of F-actin. Here, in order to develop our understanding of the VASP-actin complex, we first augment known structural information about the GAB domain binding to actin with the missing FAB domain-actin structure, which we predict using homology modeling and docking simulations. In earlier work, we used mutagenesis and kinetic modeling to study the role of domain-level binding-unbinding kinetics of Ena/VASP on actin filaments in a bundle, specifically on the side of actin filaments. We further look at the nature of the side-binding of the FAB domain of VASP at the atomistic level using our predicted structure, and tabulate effective mutation sites on the FAB domain that would disrupt the VASP-actin complex. We test the binding affinity of Ena with mutated FAB domain using total internal reflection fluorescence microscopy experiments. The binding affinity of VASP is affected significantly for the mutant, providing additional support for our predicted structure.

Indexed as

ActinsCell Adhesion MoleculesMicrofilament ProteinsPhosphoproteinsProtein BindingBinding SitesHumansVasodilator-Stimulated PhosphoproteinActinsCell Adhesion MoleculesMicrofilament ProteinsPhosphoproteinsVasodilator-Stimulated PhosphoproteinactincomputationcytoskeletonEna/VASP

Identifiers

PMID38647032
PMCPMC11333183
OpenAlexW4395001486

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.