Evidence map›Paper›PMID 38645768›Full record

ArticlePatterns (New York, N.Y.)2024

Enhancing molecular design efficiency: Uniting language models and generative networks with genetic algorithms.

Debsindhu Bhowmik, Pei Zhang, Zachary Fox, Stephan Irle, John Gounley

Abstract read
In one paragraph

Article in Patterns (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Debsindhu BhowmikComputational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Pei ZhangComputational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Zachary FoxComputational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Stephan IrleComputational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
John GounleyComputational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study examines the effectiveness of generative models in drug discovery, material science, and polymer science, aiming to overcome constraints associated with traditional inverse design methods relying on heuristic rules. Generative models generate synthetic data resembling real data, enabling deep learning model training without extensive labeled datasets. They prove valuable in creating virtual libraries of molecules for material science and facilitating drug discovery by generating molecules with specific properties. While generative adversarial networks (GANs) are explored for these purposes, mode collapse restricts their efficacy, limiting novel structure variability. To address this, we introduce a masked language model (LM) inspired by natural language processing. Although LMs alone can have inherent limitations, we propose a hybrid architecture combining LMs and GANs to efficiently generate new molecules, demonstrating superior performance over standalone masked LMs, particularly for smaller population sizes. This hybrid LM-GAN architecture enhances efficiency in optimizing properties and generating novel samples.

Indexed as

generative adversarial networkgenetic algorithmmasked language modelmolecule design

Identifiers

PMID38645768
PMCPMC11026973

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.