Evidence map›Paper›PMID 38645306›Full record

ArticleAdvanced materials technologies2024

Magnetically functionalized hydrogels for high-throughput genomic applications.

Evan Lammertse, Siran Li, Jude Kendall, Catherine Kim, Patrick Morris, Nissim Ranade, Dan Levy, Michael Wigler, Eric Brouzes

Abstract read
In one paragraph

Article in Advanced materials technologies, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Evan LammertseDepartment of Biomedical Engineering, Stony Brook University, Stony Brook, NY, 11794, USA.
Siran LiCold Spring Harbor Laboratories, Cold Spring Harbor, NY 11724, USA.
Jude KendallCold Spring Harbor Laboratories, Cold Spring Harbor, NY 11724, USA.
Catherine KimCold Spring Harbor Laboratories, Cold Spring Harbor, NY 11724, USA.
Patrick MorrisCold Spring Harbor Laboratories, Cold Spring Harbor, NY 11724, USA.
Nissim RanadeCold Spring Harbor Laboratories, Cold Spring Harbor, NY 11724, USA.
Dan LevyCold Spring Harbor Laboratories, Cold Spring Harbor, NY 11724, USA.
Michael WiglerCold Spring Harbor Laboratories, Cold Spring Harbor, NY 11724, USA.
Eric BrouzesDepartment of Biomedical Engineering, Stony Brook University, Stony Brook, NY, 11794, USA.

Funding

Multiparameter single-cell genomics platform for personalized treatment of cancerR01CA181595 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI BROUZES, ERIC · 2014 to 2018
$2.7M
NCI NIH HHS R01 CA181595
6 · The paper itself

Abstract

Single-cell genomics has revolutionized tissue analysis by revealing the genetic program of individual cells. The key aspect of the technology is the use of barcoded beads to unambiguously tag sequences originating from a single cell. The generation of unique barcodes on beads is mainly achieved by split-pooling methods, which are labor-intensive due to repeated washing steps. Towards the automation of the split-pooling method, we developed a simple method to magnetize hydrogel beads. We show that these hydrogel beads provide increased yields and washing efficiencies for purification procedures. They are also fully compatible with single-cell sequencing using the BAG-Seq workflow. Our work opens the automation of the split-pooling technique, which will improve single-cell genomic workflows.

Indexed as

automationBAG-Seqdroplet microfluidicsmagnetic separationsingle-cell genomicssplit-pooling

Identifiers

PMID38645306
PMCPMC11029686

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.