Evidence map›Paper›PMID 38643233›Full record

ArticleNature communications2024

An ancestral SARS-CoV-2 vaccine induces anti-Omicron variants antibodies by hypermutation.

Seoryeong Park, Jaewon Choi, Yonghee Lee, Jinsung Noh, Namphil Kim, JinAh Lee, Geummi Cho, Sujeong Kim, Duck Kyun Yoo, Chang Kyung Kang and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Seoryeong Park *Department of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.ORCID http://orcid.org/0009-0001-4173-4399
Jaewon Choi *Interdisciplinary Program in Bioengineering, Seoul National University, Seoul, Republic of Korea.
Yonghee LeeDepartment of Electrical and Computer Engineering, Seoul National University, Seoul, Republic of Korea.
Jinsung NohDepartment of Electrical and Computer Engineering, Seoul National University, Seoul, Republic of Korea.
Namphil KimDepartment of Electrical and Computer Engineering, Seoul National University, Seoul, Republic of Korea.
JinAh LeeZoonotic Virus Laboratory, Institut Pasteur Korea, Seongnam, Republic of Korea.ORCID http://orcid.org/0000-0002-7557-0265
Geummi ChoDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.ORCID http://orcid.org/0009-0004-9906-0878
Sujeong KimDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Duck Kyun YooDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0002-3341-4897
Chang Kyung KangDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea.
Pyoeng Gyun ChoeDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea.
Nam Joong KimDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea.
Wan Beom ParkDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0003-0022-9625
Seungtaek KimZoonotic Virus Laboratory, Institut Pasteur Korea, Seongnam, Republic of Korea. seungtaek.kim@ip-korea.org.ORCID http://orcid.org/0000-0003-3954-5908
Myoung-Don OhDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea. mdohmd@snu.ac.kr.ORCID http://orcid.org/0000-0002-2344-7695
Sunghoon KwonInterdisciplinary Program in Bioengineering, Seoul National University, Seoul, Republic of Korea. skwon@snu.ac.kr.ORCID http://orcid.org/0000-0003-3514-1738
Junho ChungDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea. jjhchung@snu.ac.kr.ORCID http://orcid.org/0000-0003-4873-8031

Funding

Korea Health Industry Development Institute (KHIDI) HI23C0521
6 · The paper itself

Abstract

The immune escape of Omicron variants significantly subsides by the third dose of an mRNA vaccine. However, it is unclear how Omicron variant-neutralizing antibodies develop under repeated vaccination. We analyze blood samples from 41 BNT162b2 vaccinees following the course of three injections and analyze their B-cell receptor (BCR) repertoires at six time points in total. The concomitant reactivity to both ancestral and Omicron receptor-binding domain (RBD) is achieved by a limited number of BCR clonotypes depending on the accumulation of somatic hypermutation (SHM) after the third dose. Our findings suggest that SHM accumulation in the BCR space to broaden its specificity for unseen antigens is a counterprotective mechanism against virus variant immune escape.

Indexed as

COVID-19COVID-19 VaccinesAntibodies, NeutralizingAntibodies, ViralBNT162 VaccineHumansSARS-CoV-2Antibodies, NeutralizingAntibodies, ViralBNT162 VaccineCOVID-19 Vaccines

Identifiers

PMID38643233
PMCPMC11032360

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.