Evidence map›Paper›PMID 38642107›Full record

ArticleCerebral cortex (New York, N.Y. : 1991)2024

Whole brain morphologic features improve the predictive accuracy of IDH status and VEGF expression levels in gliomas.

Simin Zhang, Di Chen, Huaiqiang Sun, Graham J Kemp, Yinying Chen, Qiaoyue Tan, Yuan Yang, Qiyong Gong, Qiang Yue

Open access · greenAbstract read
In one paragraph

Article in Cerebral cortex (New York, N.Y. : 1991), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Simin ZhangHuaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, Sichuan 610041, China.
Di ChenFunctional and Molecular Imaging Key Laboratory of Sichuan Province, West China Hospital of Sichuan University, Chengdu, Sichuan 610041, China.
Huaiqiang SunHuaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, Sichuan 610041, China.
Graham J KempLiverpool Magnetic Resonance Imaging Centre (LiMRIC) and Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool L69 7ZX, United Kingdom.
Yinying ChenDepartment of Radiology, West China Hospital of Sichuan University, Chengdu, Sichuan 610041, China.
Qiaoyue TanDivision of Radiation Physics, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital of Sichuan University, Chengdu, Sichuan 610041, China.
Yuan YangDepartment of Neurosurgery, West China Hospital of Sichuan University, Chengdu, Sichuan 610041, China.
Qiyong GongDepartment of Radiology, West China Xiamen Hospital of Sichuan University, Xiamen, Sichuan 610041, China.
Qiang YueDepartment of Radiology, West China Hospital of Sichuan University, Chengdu, Sichuan 610041, China.
Sichuan University · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNUniversity of Liverpool · GBXiamen University · CN

Funding

Mapping the Longitudinal Neurobiology of Early-course SchizophreniaR01MH112189 · NIMH · YALE UNIVERSITY · PI ANTICEVIC, ALAN · 2017 to 2021
$939k
Full-time Postdoctoral Research Development Fund 2024SCU12028National Key R&D Program of China 2022YFC2009900National Natural Science Foundation of China 82271961NIH/NIMH R01MH112189-01NIMH NIH HHS R01 MH112189Sichuan Provincial Foundation of Science and Technology 2023YFG0127Sichuan University
6 · The paper itself

Abstract

Glioma is a systemic disease that can induce micro and macro alternations of whole brain. Isocitrate dehydrogenase and vascular endothelial growth factor are proven prognostic markers and antiangiogenic therapy targets in glioma. The aim of this study was to determine the ability of whole brain morphologic features and radiomics to predict isocitrate dehydrogenase status and vascular endothelial growth factor expression levels. This study recruited 80 glioma patients with isocitrate dehydrogenase wildtype and high vascular endothelial growth factor expression levels, and 102 patients with isocitrate dehydrogenase mutation and low vascular endothelial growth factor expression levels. Virtual brain grafting, combined with Freesurfer, was used to compute morphologic features including cortical thickness, LGI, and subcortical volume in glioma patient. Radiomics features were extracted from multiregional tumor. Pycaret was used to construct the machine learning pipeline. Among the radiomics models, the whole tumor model achieved the best performance (accuracy 0.80, Area Under the Curve 0.86), while, after incorporating whole brain morphologic features, the model had a superior predictive performance (accuracy 0.82, Area Under the Curve 0.88). The features contributed most in predicting model including the right caudate volume, left middle temporal cortical thickness, first-order statistics, shape, and gray-level cooccurrence matrix. Pycaret, based on morphologic features, combined with radiomics, yielded highest accuracy in predicting isocitrate dehydrogenase mutation and vascular endothelial growth factor levels, indicating that morphologic abnormalities induced by glioma were associated with tumor biology.

Indexed as

Brain NeoplasmsGliomaBrainHumansIsocitrate DehydrogenaseMagnetic Resonance ImagingMutationRetrospective StudiesVascular Endothelial Growth Factor AIsocitrate DehydrogenaseVascular Endothelial Growth Factor Aautomated machine learninggliomaisocitrate dehydrogenasevascular endothelial growth factorwhole brain morphologic features

Identifiers

PMID38642107
PMCPMC13016661
OpenAlexW4394949201

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.