Evidence map›Paper›PMID 38639318›Full record

ArticleThe Journal of chemical physics2024

Potential energy landscape of a flexible water model: Equation of state, configurational entropy, and Adam-Gibbs relationship.

Ali Eltareb, Gustavo E Lopez, Nicolas Giovambattista

Abstract read
In one paragraph

Article in The Journal of chemical physics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

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0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Energy landscape statistics and thermodynamics of a machine-learned model of water.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Ali EltarebDepartment of Physics, Brooklyn College of the City University of New York, Brooklyn, New York 11210, USA.ORCID 0000-0003-3102-5721
Gustavo E LopezDepartment of Chemistry, Lehman College of the City University of New York, Bronx, New York 10468, USA.
Nicolas GiovambattistaDepartment of Physics, Brooklyn College of the City University of New York, Brooklyn, New York 11210, USA.ORCID 0000-0003-1149-0693

Funding

Novel Methodologies for the Preservation (and Recovery) of Proteins at Low TemperatureSC3GM139673 · NIGMS · HERBERT H. LEHMAN COLLEGE · PI LOPEZ-QUINONES, GUSTAVO E · 2021 to 2024
$476k
NIGMS NIH HHS SC3 GM139673
6 · The paper itself

Abstract

The potential energy landscape (PEL) formalism is a tool within statistical mechanics that has been used in the past to calculate the equation of states (EOS) of classical rigid model liquids at low temperatures, where computer simulations may be challenging. In this work, we use classical molecular dynamics (MD) simulations and the PEL formalism to calculate the EOS of the flexible q-TIP4P/F water model. This model exhibits a liquid-liquid critical point (LLCP) in the supercooled regime, at (Pc = 150 MPa, Tc = 190 K, and ρc = 1.04 g/cm3) [using the reaction field technique]. The PEL-EOS of q-TIP4P/F water and the corresponding location of the LLCP are in very good agreement with the MD simulations. We show that the PEL of q-TIP4P/F water is Gaussian, which allows us to calculate the configurational entropy of the system, Sconf. The Sconf of q-TIP4P/F water is surprisingly similar to that reported previously for rigid water models, suggesting that intramolecular flexibility does not necessarily add roughness to the PEL. We also show that the Adam-Gibbs relation, which relates the diffusion coefficient D with Sconf, holds for the flexible q-TIP4P/F water model. Overall, our results indicate that the PEL formalism can be used to study molecular systems that include molecular flexibility, the common case in standard force fields. This is not trivial since the introduction of large bending/stretching mode frequencies is problematic in classical statistical mechanics. For example, as shown previously, we find that such high frequencies lead to unphysical (negative) entropy for q-TIP4P/F water when using classical statistical mechanics (yet, the PEL formalism can be applied successfully).

Identifiers

PMID38639318
PMCPMC11184974

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.