Evidence map›Paper›PMID 38639307›Full record

ArticleGenetics2024

Evolutionary graph theory beyond single mutation dynamics: on how network-structured populations cross fitness landscapes.

Yang Ping Kuo, Oana Carja

Abstract read
In one paragraph

Article in Genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Mixed updating in structured populations.PLoS computational biology · 2026
    Article
  2. Local negative frequency dependence can decrease global coexistence in fragmented populations.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yang Ping KuoComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15232, USA.
Oana CarjaComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15232, USA.ORCID 0000-0002-4296-2326

Funding

Integrated Interdisciplinary, inter-university PhD Program Computational Biology (T32)T32EB009403 · NIBIB · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BAHAR, IVET, BAR-JOSEPH, ZIV · 2009 to 2023
$4.4M
From pattern to function: eco-evolutionary representations of complex spatial structure for the new era of spatial biologyR35GM147445 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI Oana Carja · 2022 to 2026
$1.9M
NIBIB NIH HHS T32 EB009403NIGMS NIH HHS R35 GM147445NIGMS NIH HHS R35GM147445NIH HHS T32 EB009403United States-Israel Binational Science Foundation 2019266
6 · The paper itself

Abstract

Spatially resolved datasets are revolutionizing knowledge in molecular biology, yet are under-utilized for questions in evolutionary biology. To gain insight from these large-scale datasets of spatial organization, we need mathematical representations and modeling techniques that can both capture their complexity, but also allow for mathematical tractability. Evolutionary graph theory utilizes the mathematical representation of networks as a proxy for heterogeneous population structure and has started to reshape our understanding of how spatial structure can direct evolutionary dynamics. However, previous results are derived for the case of a single new mutation appearing in the population and the role of network structure in shaping fitness landscape crossing is still poorly understood. Here we study how network-structured populations cross fitness landscapes and show that even a simple extension to a two-mutational landscape can exhibit complex evolutionary dynamics that cannot be predicted using previous single-mutation results. We show how our results can be intuitively understood through the lens of how the two main evolutionary properties of a network, the amplification and acceleration factors, change the expected fate of the intermediate mutant in the population and further discuss how to link these models to spatially resolved datasets of cellular organization.

Indexed as

Evolution, MolecularGenetic FitnessModels, GeneticMutationGenetics, Populationcell graphsevolutionary graph theoryrugged fitness landscapesspatial structurestochastic tunneling

Identifiers

PMID38639307
PMCPMC11151934

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.