Evidence map›Paper›PMID 38638648›Full record

ArticleDigital discovery2024

Predicting small molecules solubility on endpoint devices using deep ensemble neural networks.

Mayk Caldas Ramos, Andrew D White

Erratum issuedAbstract read
In one paragraph

Article in Digital discovery, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Data-Driven Critical Evaluation of the General Solubility Equation.Journal of chemical information and modeling · 2026
    Article
  2. Article
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors.

Mayk Caldas RamosChemical Engineer Department, University of Rochester Rochester NY 14642 USA andrew.white@rochester.edu.ORCID https://orcid.org/0000-0001-5336-2847
Andrew D WhiteChemical Engineer Department, University of Rochester Rochester NY 14642 USA andrew.white@rochester.edu.ORCID https://orcid.org/0000-0002-6647-3965

Funding

Learning to learn in structural biology with deep neural networksR35GM137966 · NIGMS · UNIVERSITY OF ROCHESTER · PI WHITE, ANDREW DAVID · 2020 to 2023
$1.0M
NIGMS NIH HHS R35 GM137966
6 · The paper itself

Abstract

Aqueous solubility is a valuable yet challenging property to predict. Computing solubility using first-principles methods requires accounting for the competing effects of entropy and enthalpy, resulting in long computations for relatively poor accuracy. Data-driven approaches, such as deep learning, offer improved accuracy and computational efficiency but typically lack uncertainty quantification. Additionally, ease of use remains a concern for any computational technique, resulting in the sustained popularity of group-based contribution methods. In this work, we addressed these problems with a deep learning model with predictive uncertainty that runs on a static website (without a server). This approach moves computing needs onto the website visitor without requiring installation, removing the need to pay for and maintain servers. Our model achieves satisfactory results in solubility prediction. Furthermore, we demonstrate how to create molecular property prediction models that balance uncertainty and ease of use. The code is available at https://github.com/ur-whitelab/mol.dev, and the model is useable at https://mol.dev.

Identifiers

PMID38638648
PMCPMC11022985

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.