Evidence map›Paper›PMID 38637573›Full record

ArticleScientific reports2024

Deep-learning model for evaluating histopathology of acute renal tubular injury.

Thi Thuy Uyen Nguyen, Anh-Tien Nguyen, Hyeongwan Kim, Yu Jin Jung, Woong Park, Kyoung Min Kim, Ilwoo Park, Won Kim

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Biology · 2026
    Article
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  4. Dual mechanisms of a purified root extract ofFrontiers in pharmacology · 2026
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  5. Article
  6. Normalized Raman Imaging for Studies of Tissue Physiology of the Kidney.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Thi Thuy Uyen Nguyen *Department of Histology, Embryology, Pathology and Forensic Medicine, Hue University of Medicine and Pharmacy, Hue University, Hue City, Vietnam.
Anh-Tien Nguyen *Department of Radiology, Chonnam National University and Hospital, Gwangju, Korea.
Hyeongwan KimDepartment of Internal Medicine, Jeonbuk National University Medical School, Jeonju, Republic of Korea.
Yu Jin JungDepartment of Internal Medicine, Jeonbuk National University Medical School, Jeonju, Republic of Korea.
Woong ParkDepartment of Internal Medicine, Jeonbuk National University Medical School, Jeonju, Republic of Korea.
Kyoung Min KimDepartment of Pathology, Jeonbuk National University Medical School, Jeonju, Korea.
Ilwoo ParkDepartment of Radiology, Chonnam National University and Hospital, Gwangju, Korea. ipark@chonnam.ac.kr.
Won KimDepartment of Internal Medicine, Jeonbuk National University Medical School, Jeonju, Republic of Korea. kwon@jbnu.ac.kr.

Funding

Basic Science Research Program through the National Research Foundation of Korea (NRF) 2022R1I1A1A01056360Basic Science Research Program through the National Research Foundation of Korea (NRF) NRF-2020R1I1A3055652Basic Science Research Program through the National Research Foundation of Korea (NRF) NRF-2022R1I1A3072856Basic Science Research Program through the National Research Foundation of Korea (NRF) NRF-2023R1A2C2006929the Korea government (MSIT) Institute of Information & communications Technology Planning & Evaluation (IITP) under the Artificial Intelligence Convergence Innovation Human Resources Development (IITP-2023-RS-2023-00256629)
6 · The paper itself

Abstract

Tubular injury is the most common cause of acute kidney injury. Histopathological diagnosis may help distinguish between the different types of acute kidney injury and aid in treatment. To date, a limited number of study has used deep-learning models to assist in the histopathological diagnosis of acute kidney injury. This study aimed to perform histopathological segmentation to identify the four structures of acute renal tubular injury using deep-learning models. A segmentation model was used to classify tubule-specific injuries following cisplatin treatment. A total of 45 whole-slide images with 400 generated patches were used in the segmentation model, and 27,478 annotations were created for four classes: glomerulus, healthy tubules, necrotic tubules, and tubules with casts. A segmentation model was developed using the DeepLabV3 architecture with a MobileNetv3-Large backbone to accurately identify the four histopathological structures associated with acute renal tubular injury in PAS-stained mouse samples. In the segmentation model for four structures, the highest Intersection over Union and the Dice coefficient were obtained for the segmentation of the "glomerulus" class, followed by "necrotic tubules," "healthy tubules," and "tubules with cast" classes. The overall performance of the segmentation algorithm for all classes in the test set included an Intersection over Union of 0.7968 and a Dice coefficient of 0.8772. The Dice scores for the glomerulus, healthy tubules, necrotic tubules, and tubules with cast are 91.78 ± 11.09, 87.37 ± 4.02, 88.08 ± 6.83, and 83.64 ± 20.39%, respectively. The utilization of deep learning in a predictive model has demonstrated promising performance in accurately identifying the degree of injured renal tubules. These results may provide new opportunities for the application of the proposed methods to evaluate renal pathology more effectively.

Indexed as

Acute Kidney InjuryDeep LearningAnimalsCisplatinKidneyKidney TubulesMiceNecrosisCisplatinAcute renal tubular injuryDeep learningSegmentation

Identifiers

PMID38637573
PMCPMC11026462

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