Evidence map›Paper›PMID 38633591›Full record

ArticleACS pharmacology & translational science2024

Discovery of Protease-Activated Receptor 4 (PAR4)-Tethered Ligand Antagonists Using Ultralarge Virtual Screening.

Shannon T Smith, Jackson B Cassada, Lukas Von Bredow, Kevin Erreger, Emma M Webb, Trevor A Trombley, Jacob J Kalbfleisch, Brian J Bender, Irene Zagol-Ikapitte, Valerie M Kramlinger and 7 more

Open access · hybridAbstract read
In one paragraph

Article in ACS pharmacology & translational science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 2 countries.

Shannon T SmithDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee 37232, United States.
Jackson B CassadaDepartment of Pharmacology, Vanderbilt University, Nashville, Tennessee 37232, United States.
Lukas Von BredowWarren Center for Neuroscience Drug Discovery, Nashville, Tennessee 37067, United States.
Kevin ErregerDepartment of Pharmacology, Vanderbilt University, Nashville, Tennessee 37232, United States.ORCID https://orcid.org/0000-0001-5801-2344
Emma M WebbDepartment of Pharmacology, Vanderbilt University, Nashville, Tennessee 37232, United States.
Trevor A TrombleyWarren Center for Neuroscience Drug Discovery, Nashville, Tennessee 37067, United States.ORCID https://orcid.org/0000-0003-0413-0913
Jacob J KalbfleischDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee 37232, United States.
Brian J BenderDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California 94158, United States.
Irene Zagol-IkapitteWarren Center for Neuroscience Drug Discovery, Nashville, Tennessee 37067, United States.
Valerie M KramlingerDepartment of Pharmacology, Vanderbilt University, Nashville, Tennessee 37232, United States.
Jacob L BouchardWarren Center for Neuroscience Drug Discovery, Nashville, Tennessee 37067, United States.ORCID https://orcid.org/0000-0002-5936-1244
Sidnee G MitchellDepartment of Pharmacology, Vanderbilt University, Nashville, Tennessee 37232, United States.
Maik TretbarInstitute for Drug Discovery, Leipzig University Medical School, Leipzig 04109, Germany.
Brian K ShoichetDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, California 94158, United States.ORCID https://orcid.org/0000-0002-6098-7367
Craig W LindsleyDepartment of Pharmacology, Vanderbilt University, Nashville, Tennessee 37232, United States.ORCID https://orcid.org/0000-0003-0168-1445
Jens MeilerDepartment of Pharmacology, Vanderbilt University, Nashville, Tennessee 37232, United States.
Heidi E HammDepartment of Pharmacology, Vanderbilt University, Nashville, Tennessee 37232, United States.
Vanderbilt University · USLeipzig University · DEUniversity of California, San Francisco · US

Funding

Decrypting Variants of Uncertain Significance in Long-QT SyndromeR01HL122010 · NHLBI · VANDERBILT UNIVERSITY · PI GEORGE, ALFRED L., SANDERS, CHARLES R · 2014 to 2025
$15.5M
TRAINING IN PHARMACOLOGICAL SCIENCEST32GM007628 · NIGMS · VANDERBILT UNIVERSITY · PI BARNETT, JOEY VICTOR, KAVALALI, EGE T · 1985 to 2022
$11.2M
Targeting PAR4 in Thrombotic Disorders:Pharmacogenomic ApproachR01HL133923 · NHLBI · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E · 2017 to 2020
$2.3M
Cerebrovascular involvement in Alzheimer's Disease: PAR4 AntagonismRF1AG068623 · NIA · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E, MEILER, JENS · 2021 to 2021
$2.2M
Structural Determinants of Allosteric Modulation of Brain GPCRsR01DA046138 · NIDA · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2019 to 2023
$2.0M
Mechanistic insights into Variants of Uncertain Significance (VUS) using novel EGFR variants as a paradigmR01CA227833 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LOVLY, CHRISTINE M., MEILER, JENS · 2019 to 2023
$1.7M
Cerebrovascular involvement in Alzheimer's Disease: PAR4 AntagonismR01AG068623 · NIA · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E, MEILER, JENS · 2024 to 2025
$1.4M
Optimization of PAR4 antagonists for thrombotic disordersR01NS081669 · NINDS · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E · 2013 to 2015
$1.0M
Screening for allosteric modulators of the protease activated receptor 4R01NS082198 · NINDS · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E · 2013 to 2015
$1.0M
GPU-Accelerated Parallel Computer for Life Sciences ResearchS10OD032234 · OD · VANDERBILT UNIVERSITY · PI SMITH, JARROD ANSON · 2022 to 2022
$600k
Parallel Computer with High Memory NodesS10OD016216 · OD · VANDERBILT UNIVERSITY · PI PISTON, DAVID W · 2013 to 2013
$598k
Role of Protease Activated Receptor 4 in cerebrovascular dysfunction and dementiaR21AG073891 · NIA · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E · 2021 to 2022
$462k
NCI NIH HHS R01 CA227833NHLBI NIH HHS R01 HL122010NHLBI NIH HHS R01 HL133923NIA NIH HHS R01 AG068623NIA NIH HHS R21 AG073891NIA NIH HHS RF1 AG068623NIDA NIH HHS R01 DA046138NIGMS NIH HHS T32 GM007628NIH HHS S10 OD016216NIH HHS S10 OD020154NIH HHS S10 OD032234NINDS NIH HHS R01 NS081669NINDS NIH HHS R01 NS082198
6 · The paper itself

Abstract

Here, we demonstrate a structure-based small molecule virtual screening and lead optimization pipeline using a homology model of a difficult-to-drug G-protein-coupled receptor (GPCR) target. Protease-activated receptor 4 (PAR4) is activated by thrombin cleavage, revealing a tethered ligand that activates the receptor, making PAR4 a challenging target. A virtual screen of a make-on-demand chemical library yielded a one-hit compound. From the single-hit compound, we developed a novel series of PAR4 antagonists. Subsequent lead optimization via simultaneous virtual library searches and structure-based rational design efforts led to potent antagonists of thrombin-induced activation. Interestingly, this series of antagonists was active against PAR4 activation by the native protease thrombin cleavage but not the synthetic PAR4 agonist peptide AYPGKF.

Identifiers

PMID38633591
PMCPMC11020070
OpenAlexW4393042855

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.