Evidence map›Paper›PMID 38632390›Full record

ArticleScientific reports2024

ANTsX neuroimaging-derived structural phenotypes of UK Biobank.

Nicholas J Tustison, Michael A Yassa, Batool Rizvi, Philip A Cook, Andrew J Holbrook, Mithra T Sathishkumar, Mia G Tustison, James C Gee, James R Stone, Brian B Avants

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Nicholas J TustisonDepartment of Radiology and Medical Imaging, University of Virginia, Charlottesville, VA, USA. ntustison@virginia.edu.
Michael A YassaDepartment of Neurobiology and Behavior, University of California, Irvine, CA, USA.
Batool RizviDepartment of Neurobiology and Behavior, University of California, Irvine, CA, USA.
Philip A CookDepartment of Radiology, University of Pennsylvania, Philadelphia, PA, USA.
Andrew J HolbrookDepartment of Biostatistics, University of California, Los Angeles, CA, USA.
Mithra T SathishkumarDepartment of Neurobiology and Behavior, University of California, Irvine, CA, USA.
Mia G TustisonSantiago High School, Corona, CA, USA.
James C GeeDepartment of Radiology, University of Pennsylvania, Philadelphia, PA, USA.
James R StoneDepartment of Radiology and Medical Imaging, University of Virginia, Charlottesville, VA, USA.
Brian B AvantsDepartment of Radiology and Medical Imaging, University of Virginia, Charlottesville, VA, USA.

Funding

Advanced Normalization ToolsR01EB031722 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI GEE, JAMES C · 2022 to 2025
$2.7M
NIBIB NIH HHS R01 EB031722NIH HHS R01-EB031722
6 · The paper itself

Abstract

UK Biobank is a large-scale epidemiological resource for investigating prospective correlations between various lifestyle, environmental, and genetic factors with health and disease progression. In addition to individual subject information obtained through surveys and physical examinations, a comprehensive neuroimaging battery consisting of multiple modalities provides imaging-derived phenotypes (IDPs) that can serve as biomarkers in neuroscience research. In this study, we augment the existing set of UK Biobank neuroimaging structural IDPs, obtained from well-established software libraries such as FSL and FreeSurfer, with related measurements acquired through the Advanced Normalization Tools Ecosystem. This includes previously established cortical and subcortical measurements defined, in part, based on the Desikan-Killiany-Tourville atlas. Also included are morphological measurements from two recent developments: medial temporal lobe parcellation of hippocampal and extra-hippocampal regions in addition to cerebellum parcellation and thickness based on the Schmahmann anatomical labeling. Through predictive modeling, we assess the clinical utility of these IDP measurements, individually and in combination, using commonly studied phenotypic correlates including age, fluid intelligence, numeric memory, and several other sociodemographic variables. The predictive accuracy of these IDP-based models, in terms of root-mean-squared-error or area-under-the-curve for continuous and categorical variables, respectively, provides comparative insights between software libraries as well as potential clinical interpretability. Results demonstrate varied performance between package-based IDP sets and their combination, emphasizing the need for careful consideration in their selection and utilization.

Indexed as

Biological Specimen BanksUK BiobankBrainEcosystemMagnetic Resonance ImagingNeuroimagingPhenotypeProspective Studies

Identifiers

PMID38632390
PMCPMC11024129

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.