Evidence map›Paper›PMID 38632234›Full record

ArticleNature communications2024

Modulation of peroxisomal import by the PEX13 SH3 domain and a proximal FxxxF binding motif.

Stefan Gaussmann, Rebecca Peschel, Julia Ott, Krzysztof M Zak, Judit Sastre, Florent Delhommel, Grzegorz M Popowicz, Job Boekhoven, Wolfgang Schliebs, Ralf Erdmann and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Evolutionary remodeling of a remnant GET pathway factor into PEX38, an essential peroxin.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
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  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Stefan Gaussmann *Technical University of Munich, TUM School of Natural Sciences, Bavarian NMR Center and Department of Bioscience, Lichtenbergstr. 4, 85747, Garching, Germany.ORCID http://orcid.org/0000-0003-0225-5165
Rebecca Peschel *Institute of Biochemistry and Pathobiochemistry, Department of Systems Biology, Faculty of Medicine, Ruhr University Bochum, 44780, Bochum, Germany.ORCID http://orcid.org/0000-0003-0041-5268
Julia OttInstitute of Biochemistry and Pathobiochemistry, Department of Systems Biology, Faculty of Medicine, Ruhr University Bochum, 44780, Bochum, Germany.
Krzysztof M ZakHelmholtz Munich, Molecular Targets and Therapeutics Center, Institute of Structural Biology, Ingolstädter Landstr. 1, 85764, Neuherberg, Germany.
Judit SastreTechnical University of Munich, TUM School of Natural Sciences, Department of Chemistry, Lichtenbergstr. 4, 85747, Garching, Germany.
Florent DelhommelTechnical University of Munich, TUM School of Natural Sciences, Bavarian NMR Center and Department of Bioscience, Lichtenbergstr. 4, 85747, Garching, Germany.ORCID http://orcid.org/0000-0001-7021-087X
Grzegorz M PopowiczTechnical University of Munich, TUM School of Natural Sciences, Bavarian NMR Center and Department of Bioscience, Lichtenbergstr. 4, 85747, Garching, Germany.ORCID http://orcid.org/0000-0003-2818-7498
Job BoekhovenTechnical University of Munich, TUM School of Natural Sciences, Department of Chemistry, Lichtenbergstr. 4, 85747, Garching, Germany.ORCID http://orcid.org/0000-0002-9126-2430
Wolfgang SchliebsInstitute of Biochemistry and Pathobiochemistry, Department of Systems Biology, Faculty of Medicine, Ruhr University Bochum, 44780, Bochum, Germany.
Ralf ErdmannInstitute of Biochemistry and Pathobiochemistry, Department of Systems Biology, Faculty of Medicine, Ruhr University Bochum, 44780, Bochum, Germany. ralf.erdmann@rub.de.ORCID http://orcid.org/0000-0001-8380-0342
Michael SattlerTechnical University of Munich, TUM School of Natural Sciences, Bavarian NMR Center and Department of Bioscience, Lichtenbergstr. 4, 85747, Garching, Germany. sattler@helmholtz-munich.de.ORCID http://orcid.org/0000-0002-1594-0527
Helmholtz Zentrum München · DERuhr University Bochum · DETechnical University of Munich · DEUniversity Hospitals of the Ruhr-University of Bochum · DE

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) FOR905 project number 219314758
6 · The paper itself

Abstract

Import of proteins into peroxisomes depends on PEX5, PEX13 and PEX14. By combining biochemical methods and structural biology, we show that the C-terminal SH3 domain of PEX13 mediates intramolecular interactions with a proximal FxxxF motif. The SH3 domain also binds WxxxF peptide motifs in the import receptor PEX5, demonstrating evolutionary conservation of such interactions from yeast to human. Strikingly, intramolecular interaction of the PEX13 FxxxF motif regulates binding of PEX5 WxxxF/Y motifs to the PEX13 SH3 domain. Crystal structures reveal how FxxxF and WxxxF/Y motifs are recognized by a non-canonical surface on the SH3 domain. The PEX13 FxxxF motif also mediates binding to PEX14. Surprisingly, the potential PxxP binding surface of the SH3 domain does not recognize PEX14 PxxP motifs, distinct from its yeast ortholog. Our data show that the dynamic network of PEX13 interactions with PEX5 and PEX14, mediated by diaromatic peptide motifs, modulates peroxisomal matrix import.

Indexed as

Membrane ProteinsProtein TransportSaccharomyces cerevisiae Proteinssrc Homology DomainsHumansPeptidesPeroxisomesPeroxisome-Targeting Signal 1 ReceptorProtein BindingSaccharomyces cerevisiaeMembrane ProteinsPeptidesPeroxisome-Targeting Signal 1 ReceptorPEX13 protein, humanPEX13 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID38632234
PMCPMC11024197
OpenAlexW4394920729

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.