Evidence map›Paper›PMID 38630846›Full record

ArticleScience translational medicine2024

Host-microbe multiomic profiling reveals age-dependent immune dysregulation associated with COVID-19 immunopathology.

Hoang Van Phan, Alexandra Tsitsiklis, Cole P Maguire, Elias K Haddad, Patrice M Becker, Seunghee Kim-Schulze, Brian Lee, Jing Chen, Annmarie Hoch, Harry Pickering and 23 more

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Science translational medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 23 citations in OpenAlex.

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  10. The Impact of Aging Oral Health on Long COVID-19.Journal of dental research · 2025
    Review
  11. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 12 institutions in 1 country.

Hoang Van PhanUniversity of California San Francisco, San Francisco, CA 94115, USA.ORCID 0000-0002-0162-4283
Alexandra TsitsiklisUniversity of California San Francisco, San Francisco, CA 94115, USA.ORCID 0000-0003-3467-1171
Cole P MaguireUniversity of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0001-8986-9762
Elias K HaddadDrexel University, Tower Health Hospital, Philadelphia, PA 19104, USA.
Patrice M BeckerNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20814, USA.ORCID 0000-0002-1170-8587
Seunghee Kim-SchulzeIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0003-0192-4400
Brian LeeIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0002-1291-3208
Jing ChenPrecision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Annmarie HochPrecision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-0836-2164
Harry PickeringDavid Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.ORCID 0000-0003-2348-5410
Patrick van ZalmPrecision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-0806-3685
Matthew C AltmanBenaroya Research Institute, University of Washington, Seattle, WA 98101, USA.ORCID 0000-0002-1784-8505
Alison D AugustineNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20814, USA.ORCID 0000-0003-0064-9785
Carolyn S CalfeeUniversity of California San Francisco, San Francisco, CA 94115, USA.
Steve BosingerEmory School of Medicine, Atlanta, GA 30322, USA.ORCID 0000-0002-2116-5061
Charles B CairnsDrexel University, Tower Health Hospital, Philadelphia, PA 19104, USA.ORCID 0000-0003-2291-5415
Walter EckalbarUniversity of California San Francisco, San Francisco, CA 94115, USA.ORCID 0000-0003-2520-7852
Leying GuanYale School of Public Health, New Haven, CT 06510, USA.
Naresh Doni JayaveluBenaroya Research Institute, University of Washington, Seattle, WA 98101, USA.
Steven H KleinsteinYale School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0003-4957-1544
Florian KrammerIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0003-4121-776X
Holden T MaeckerStanford University School of Medicine, Palo Alto, CA 94305, USA.ORCID 0000-0003-0795-9946
Al OzonoffPrecision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-4233-5899
Bjoern PetersLa Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0002-8457-6693
Nadine RouphaelEmory School of Medicine, Atlanta, GA 30322, USA.ORCID 0000-0002-2512-7919
IMPACC Network
Ruth R MontgomeryYale School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0002-8661-4454
Elaine ReedDavid Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.
Joanna SchaenmanDavid Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.ORCID 0000-0003-1174-3961
Hanno SteenPrecision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-0179-6648
Ofer LevyPrecision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-5859-1945
Joann Diray-ArcePrecision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-2183-4269
Charles R LangelierUniversity of California San Francisco, San Francisco, CA 94115, USA.ORCID 0000-0002-6708-4646
Boston Children's Hospital · USUniversity of California, San Francisco · USIcahn School of Medicine at Mount Sinai · USUniversity of California, Los Angeles · USYale University · USDrexel University · USEmory University · USNational Institutes of Health · USUniversity of Washington · USLa Jolla Institute for Immunology · USPalo Alto University · USThe University of Texas at Austin · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI David A. Hafler, RUTH R MONTGOMERY · 2010 to 2026
$50.4M
Project 3 - Ex vivo immune profiling of dengue viruses and vaccinesU19AI118610 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KASARSKIS, ANDREW · 2015 to 2021
$46.6M
Systems Biological Analysis of Innate and Adaptive Responses to VaccinationU19AI090023 · NIAID · EMORY UNIVERSITY · PI AHMED, RAFI, LI, SHUZHAO · 2010 to 2021
$45.0M
Understanding Asthma EndotypesU19AI077439 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI David J Erle · 2008 to 2026
$41.1M
Clinical and Translational Science Collaborative of Northern Ohio, Catalyzing Linkages to Equity in Health (CLE Health)UM1TR004528 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI GRACE A MCCOMSEY · 2023 to 2026
$32.1M
Transcriptomics to define biomarkers of neonatal vaccine immunogenicityU19AI118608 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI LEVY, OFER · 2017 to 2021
$24.7M
Systems Immunology profiling of respiratory viral infections in vulnerable populationsU19AI167891 · NIAID · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI Erik Wambre · 2022 to 2026
$14.0M
Systems biological assessment of T cell responses to vaccinationU19AI167903 · NIAID · STANFORD UNIVERSITY · PI BALI PULENDRAN · 2022 to 2026
$13.2M
Project 3: Mapping the Evolution of Chronic Transplant Injury in the Context of CMV InfectionU19AI128913 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LANIER, LEWIS LEE · 2017 to 2021
$11.2M
The contribution of GPCRs to thymocyte medullary entry and central toleranceR01AI104870 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI Lauren Ilyse Richie EHRLICH · 2014 to 2026
$7.6M
Investigating the impact of helminth infection on microbioma composition and innate immunity generated during HepB vaccination. U19AI128910 · NIAID · DREXEL UNIVERSITY · PI KALEEBU, PONTIANO · 2017 to 2021
$7.0M
BLRD VA I01 BX005023NCATS NIH HHS UM1 TR004528NHLBI NIH HHS R01 HL155418NIAID NIH HHS R01 AI104870NIAID NIH HHS R01 AI132774NIAID NIH HHS R01 AI135803NIAID NIH HHS R01 AI145835NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI077439NIAID NIH HHS U19 AI089992NIAID NIH HHS U19 AI090023NIAID NIH HHS U19 AI118608NIAID NIH HHS U19 AI118610NIAID NIH HHS U19 AI128910NIAID NIH HHS U19 AI128913NIH HHS S10 OD026880NIH HHS S10 OD030463
6 · The paper itself

Abstract

Age is a major risk factor for severe coronavirus disease 2019 (COVID-19), yet the mechanisms behind this relationship have remained incompletely understood. To address this, we evaluated the impact of aging on host immune response in the blood and the upper airway, as well as the nasal microbiome in a prospective, multicenter cohort of 1031 vaccine-naïve patients hospitalized for COVID-19 between 18 and 96 years old. We performed mass cytometry, serum protein profiling, anti-severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) antibody assays, and blood and nasal transcriptomics. We found that older age correlated with increased SARS-CoV-2 viral abundance upon hospital admission, delayed viral clearance, and increased type I interferon gene expression in both the blood and upper airway. We also observed age-dependent up-regulation of innate immune signaling pathways and down-regulation of adaptive immune signaling pathways. Older adults had lower naïve T and B cell populations and higher monocyte populations. Over time, older adults demonstrated a sustained induction of pro-inflammatory genes and serum chemokines compared with younger individuals, suggesting an age-dependent impairment in inflammation resolution. Transcriptional and protein biomarkers of disease severity differed with age, with the oldest adults exhibiting greater expression of pro-inflammatory genes and proteins in severe disease. Together, our study finds that aging is associated with impaired viral clearance, dysregulated immune signaling, and persistent and potentially pathologic activation of pro-inflammatory genes and proteins.

Indexed as

COVID-19AdolescentAdultAgedAged, 80 and overChemokinesHumansMiddle AgedMultiomicsProspective StudiesSARS-CoV-2Young AdultChemokines

Identifiers

PMID38630846
PMCPMC11931290
OpenAlexW4394874395

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.