Evidence map›Paper›PMID 38630623›Full record

ArticleG3 (Bethesda, Md.)2024

A reference quality genome assembly for the jewel scarab Chrysina gloriosa.

Terrence Sylvester, Zachary Hoover, Carl E Hjelmen, Michelle M Jonika, Leslie T Blackmon, James M Alfieri, J Spencer Johnston, Sean Chien, Tahmineh Esfandani, Heath Blackmon

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Terrence SylvesterDepartment of Biology, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0001-6683-0793
Zachary HooverDepartment of Biology, Texas A&M University, College Station, TX 77843, USA.ORCID 0009-0009-4056-7419
Carl E HjelmenDepartment of Biology, Texas A&M University, College Station, TX 77843, USA.
Michelle M JonikaDepartment of Biology, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0002-1170-6418
Leslie T BlackmonDepartment of Biology, Texas A&M University, College Station, TX 77843, USA.
James M AlfieriInterdisciplinary Program in Ecology and Evolutionary Biology, Texas A&M University, College Station, TX 77843, USA.
J Spencer JohnstonDepartment of Entomology, Texas A&M University, College Station, TX 77843, USA.
Sean ChienDepartment of Biology, Texas A&M University, College Station, TX 77843, USA.
Tahmineh EsfandaniDepartment of Biology, Texas A&M University, College Station, TX 77843, USA.
Heath BlackmonDepartment of Biology, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0002-5433-4036
Texas A&M University · USThe University of Texas at Austin · USUtah Valley University · US

Funding

Integrating theory, genomics, and comparative approaches to break barriers to the understanding of genome structure and sex chromosome evolution.R35GM138098 · NIGMS · TEXAS A&M UNIVERSITY · PI BLACKMON, HEATH · 2020 to 2024
$1.8M
NIGMS NIH HHS R35 GM138098NIH
6 · The paper itself

Abstract

The jewel scarab Chrysina gloriosa is one of the most charismatic beetles in the United States and is found from the mountains of West Texas to the Southeastern Arizona sky islands. This species is highly sought by professional and amateur collectors worldwide due to its gleaming metallic coloration. However, the impact of the large-scale collection of this beetle on its populations is unknown, and there is a limited amount of genetic information available to make informed decisions about its conservation. As a first step, we present the genome of C. gloriosa, which we reconstructed using a single female specimen sampled from our ongoing effort to document population connectivity and the demographic history of this beetle. Using a combination of long-read sequencing and Omni-C data, we reconstructed the C. gloriosa genome at a near-chromosome level. Our genome assembly consisted of 454 scaffolds spanning 642 MB, with the 10 largest scaffolds capturing 98% of the genome. The scaffold N50 was 72 MB, and the BUSCO score was 95.5%. This genome assembly will be an essential tool to accelerate understanding C. gloriosa biology and help make informed decisions for the conservation of Chrysina and other species with similar distributions in this region. This genome assembly will further serve as a community resource for comparative genomic analysis.

Indexed as

ColeopteraGenome, InsectAnimalsFemaleGenomicsMolecular Sequence AnnotationbeetlesColeoptera genomessex chromosomessky islands

Identifiers

PMID38630623
PMCPMC11152064
OpenAlexW4394892701

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.