Evidence map›Paper›PMID 38630315›Full record

ArticleArchives of virology2024

A highly divergent enteric calicivirus in a bovine calf in India.

Naveen Kumar, Rahul Kaushik, Pragya Yadav, Shubhankar Sircar, Anita Shete-Aich, Ashutosh Singh, Yashpal Singh Malik

Abstract read
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In one paragraph

Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Clinical and Epidemiological Features of Calicivirus Infections in Cattle.Animals : an open access journal from MDPI · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Naveen KumarDiagnostics and Vaccines Group, ICAR - National Institute of High Security Animal Diseases, Bhopal, Madhya Pradesh, India.
Rahul KaushikBiotechnology Research Center, Technology Innovation Institute, Masdar City, Abu Dhabi, UAE.
Pragya YadavMaximum Containment Facility, ICMR - National Institute of Virology, Pune, India.
Shubhankar SircarDepartment of Animal Sciences, Washington State University, Pullman, Washington, USA.
Anita Shete-AichMaximum Containment Facility, ICMR - National Institute of Virology, Pune, India.
Ashutosh SinghDiagnostics and Vaccines Group, ICAR - National Institute of High Security Animal Diseases, Bhopal, Madhya Pradesh, India.
Yashpal Singh MalikCollege of Animal Biotechnology, Guru Angad Dev Veterinary and Animal Science University, Ludhiana, Punjab, India. malikyps@gmail.com.ORCID http://orcid.org/0000-0002-2832-4854
ICMR-National Institute of Virology · INNational Institute of High Security Animal Diseases · INGuru Angad Dev Veterinary and Animal Sciences University · INTechnology Innovation Institute · AEWashington State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A highly divergent bovine calicivirus was identified in an Indian calf with enteritis. The whole genome of this virus was sequenced, revealing distinct amino acid motifs in the polyprotein encoded by open reading frame 1 (ORF1) that are unique to caliciviruses. Phylogenetic analysis showed that it was related to members of the genus Nebovirus of the family Caliciviridae. Although it showed only 33.7-34.2% sequence identity in the VP1 protein to the nebovirus prototype strains, it showed 90.6% identity in VP1 to Kirklareli virus, a nebovirus detected in calves with enteritis in Turkey in 2012. An in-house-designed and optimized reverse transcription polymerase chain reaction (RT-PCR) assay was used to screen 120 archived bovine diarrhoeic fecal samples, 40 each from the Indian states of Uttar Pradesh, Haryana, and Himachal Pradesh, revealing frequent circulation of these divergent caliciviruses in the bovine population, with an overall positivity rate of 64.17% (77/120). This underscores the importance of conducting a comprehensive investigation of the prevalence of these divergent caliciviruses and assessing their associations with other pathogens responsible for enteritis in India.

Indexed as

CaliciviridaeEnteritisRNA VirusesAnimalsCattleIndiaPhylogenyCalfCalicivirusesIndiaNebovirus

Identifiers

PMID38630315
OpenAlexW4394873856

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.