Evidence map›Paper›PMID 38630169›Full record

ArticleInflammation2024

The Role of Immunocyte Infiltration Regulatory Network Based on hdWGCNA and Single-Cell Bioinformatics Analysis in Intervertebral Disc Degeneration.

Tuo Shao, Qichang Gao, Weilong Tang, Yiming Ma, Jiaao Gu, Zhange Yu

Abstract read
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In one paragraph

Article in Inflammation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tuo ShaoDepartment of Spinal Surgery, First Affiliated Hospital of Harbin Medical University, No.23 Youzheng Street, Harbin, 150001, China.
Qichang GaoDepartment of Spinal Surgery, First Affiliated Hospital of Harbin Medical University, No.23 Youzheng Street, Harbin, 150001, China.
Weilong TangDepartment of Spinal Surgery, First Affiliated Hospital of Harbin Medical University, No.23 Youzheng Street, Harbin, 150001, China.
Yiming MaDepartment of Spinal Surgery, First Affiliated Hospital of Harbin Medical University, No.23 Youzheng Street, Harbin, 150001, China.
Jiaao GuDepartment of Spinal Surgery, First Affiliated Hospital of Harbin Medical University, No.23 Youzheng Street, Harbin, 150001, China.
Zhange YuDepartment of Spinal Surgery, First Affiliated Hospital of Harbin Medical University, No.23 Youzheng Street, Harbin, 150001, China. zhangeyu1967@aliyun.com.
First Affiliated Hospital of Harbin Medical University · CNHarbin Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Immune infiltration plays a crucial role in intervertebral disc degeneration (IDD). In this study, we explored the immune microenvironment of IDD through single-cell bioinformatics analysis. Three single-cell datasets were integrated into this study. Nucleus pulposus cells (NPCs) were divided into subgroups based on characteristic genes, and the role of each subgroup in the IDD process was analyzed through pseudo-time trajectory analysis. The hub genes were obtained using hdWGCNA, further identified by bulk datasets and pseudo-time sequence. The expression of the hub genes defined the NPCs related to immune infiltration, and the interaction between these NPCs and immunocytes was explored. The NPCs were divided into four subgroups: reserve NPCs, HCL-NPCs, response NPCs, and support NPCs, which, respectively, dominate the four processes of IDD: non, mild, moderate, and severe degeneration. SPP1 and ICAM1 were identified as the nucleus pulposus immune infiltration hub genes. Macrophages and myelocytes played pro-inflammatory roles in the SPP1-ICAM both-up NPC group through the SPP1-CD44 pathway and ICAM1-ITGB2 ligand-receptor pathway, respectively. At the same time, both-up NPCs sought self-help inflammation remission from neutrophils through the ANXA1-FPR1 pathway. The systematic analysis of the differentiation and immune infiltration landscapes helps to understand IDD's overall development process. Our data suggest that SPP1 and ICAM1 may be new targets for the treatment of inflammatory infiltration in IDD.

Indexed as

Computational BiologyIntervertebral Disc DegenerationNucleus PulposusSingle-Cell AnalysisGene Regulatory NetworksHumansIntercellular Adhesion Molecule-1OsteopontinICAM1 protein, humanIntercellular Adhesion Molecule-1Osteopontinbioinformatics analysisimmune infiltration.intervertebral disc degenerationsingle cell

Identifiers

PMID38630169
OpenAlexW4394874241

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.