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ArticleFrontiers in molecular neuroscience2024

KANPHOS: Kinase-associated neural phospho-signaling database for data-driven research.

Takayuki Kannon, Satoshi Murashige, Tomoki Nishioka, Mutsuki Amano, Yasuhiro Funahashi, Daisuke Tsuboi, Yukie Yamahashi, Taku Nagai, Kozo Kaibuchi, Junichiro Yoshimoto

Open access · goldAbstract read
In one paragraph

Article in Frontiers in molecular neuroscience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Takayuki KannonDepartment of Biomedical Data Science, Fujita Health University School of Medicine, Toyoake, Japan.
Satoshi MurashigeDepartment of Biomedical Data Science, Fujita Health University School of Medicine, Toyoake, Japan.
Tomoki NishiokaDivision of Cell Biology, International Center for Brain Science, Fujita Health University, Toyoake, Japan.
Mutsuki AmanoDepartment of Cell Pharmacology, Graduate School of Medicine, Nagoya University, Nagoya, Japan.
Yasuhiro FunahashiDivision of Cell Biology, International Center for Brain Science, Fujita Health University, Toyoake, Japan.
Daisuke TsuboiDivision of Cell Biology, International Center for Brain Science, Fujita Health University, Toyoake, Japan.
Yukie YamahashiDivision of Cell Biology, International Center for Brain Science, Fujita Health University, Toyoake, Japan.
Taku NagaiDivision of Behavioral Neuropharmacology, International Center for Brain Science, Fujita Health University, Toyoake, Japan.
Kozo KaibuchiDivision of Cell Biology, International Center for Brain Science, Fujita Health University, Toyoake, Japan.
Junichiro YoshimotoDepartment of Biomedical Data Science, Fujita Health University School of Medicine, Toyoake, Japan.
Fujita Health University · JPNagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein phosphorylation, a key regulator of cellular processes, plays a central role in brain function and is implicated in neurological disorders. Information on protein phosphorylation is expected to be a clue for understanding various neuropsychiatric disorders and developing therapeutic strategies. Nonetheless, existing databases lack a specific focus on phosphorylation events in the brain, which are crucial for investigating the downstream pathway regulated by neurotransmitters. To overcome the gap, we have developed a web-based database named "Kinase-Associated Neural PHOspho-Signaling (KANPHOS)." This paper presents the design concept, detailed features, and a series of improvements for KANPHOS. KANPHOS is designed to support data-driven research by fulfilling three key objectives: (1) enabling the search for protein kinases and their substrates related to extracellular signals or diseases; (2) facilitating a consolidated search for information encompassing phosphorylated substrate genes, proteins, mutant mice, diseases, and more; and (3) offering integrated functionalities to support pathway and network analysis. KANPHOS is also equipped with API functionality to interact with external databases and analysis tools, enhancing its utility in data-driven investigations. Those key features represent a critical step toward unraveling the complex landscape of protein phosphorylation in the brain, with implications for elucidating the molecular mechanisms underlying neurological disorders. KANPHOS is freely accessible to all researchers at https://kanphos.jp.

Indexed as

databasedata-driven researchKinase-Associated Neural Signalingpathway analysisprotein phosphorylation

Identifiers

PMID38628370
PMCPMC11018961
OpenAlexW4393443765

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.