Evidence map›Paper›PMID 38627868›Full record

SynthesisHuman genomics2024

Altered skin microbiome, inflammation, and JAK/STAT signaling in Southeast Asian ichthyosis patients.

Minh Ho, Huynh-Nga Nguyen, Minh Van Hoang, Tien Thuy Thi Bui, Bao-Quoc Vu, Truc Huong Thi Dinh, Hoa Thi My Vo, Diana C Blaydon, Sherif A Eldirany, Christopher G Bunick and 1 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Human genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 8 institutions in 3 countries.

Minh Ho *Department of Dermatology and Program in Translational Biomedicine, Yale University, New Haven, CT, USA.
Huynh-Nga Nguyen *Microbial Genomics DNA Medical Technology, Ho Chi Minh, Vietnam.
Minh Van Hoang *Vietnam Vascular Anomalies Center, University Medical Center 3, Ho Chi Minh, Vietnam.
Tien Thuy Thi BuiHung Vuong Maternal's Hospital, Ho Chi Minh, Vietnam.
Bao-Quoc VuMicrobial Genomics DNA Medical Technology, Ho Chi Minh, Vietnam.
Truc Huong Thi DinhDepartment of Pathophysiology and Immunology, Can Tho University of Medicine and Pharmacy, Can Tho, Vietnam.
Hoa Thi My VoOxford University Clinical Research Unit, Ho Chi Minh, Vietnam.
Diana C BlaydonCentre for Cell Biology and Cutaneous Research, Blizard Institute, Queen Mary University of London, London, UK.
Sherif A EldiranyDepartment of Dermatology and Program in Translational Biomedicine, Yale University, New Haven, CT, USA.
Christopher G BunickDepartment of Dermatology and Program in Translational Biomedicine, Yale University, New Haven, CT, USA. Christopher.bunick@yale.edu.
Chi-Bao BuiMicrobial Genomics DNA Medical Technology, Ho Chi Minh, Vietnam. bcbao@medvnu.edu.vn.
Yale University · USDalat University · VNCan Tho University of Medicine and PharmacyChildren's Hospital 2 · VNHung Vuong Hospital · VNOxford University Clinical Research Unit · VNQueen Mary University of London · GBUniversity Medical Center HCMC · VN

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Molecular function of an intermediate filament assembly mechanism in epidermal protein complexes and cell migrationR01AR079428 · NIAMS · YALE UNIVERSITY · PI BUNICK, CHRISTOPHER GERARD · 2021 to 2025
$1.8M
Determining Structure and Function of Human Skin Barrier Proteins Using X-ray CrystallographyK08AR070290 · NIAMS · YALE UNIVERSITY · PI BUNICK, CHRISTOPHER GERARD · 2016 to 2020
$754k
Electron microscopy analysis of novel knob-pocket mechanism critical for intermediate filament assemblyR03AR076484 · NIAMS · YALE UNIVERSITY · PI BUNICK, CHRISTOPHER GERARD · 2020 to 2021
$165k
NCATS NIH HHS UL1 TR001863NIAMS NIH HHS K08 AR070290NIAMS NIH HHS K08AR070290NIAMS NIH HHS R01 AR079428NIAMS NIH HHS R03 AR076484
6 · The paper itself

Abstract

backgroundCongenital ichthyosis (CI) is a collective group of rare hereditary skin disorders. Patients present with epidermal scaling, fissuring, chronic inflammation, and increased susceptibility to infections. Recently, there is increased interest in the skin microbiome; therefore, we hypothesized that CI patients likely exhibit an abnormal profile of epidermal microbes because of their various underlying skin barrier defects. Among recruited individuals of Southeast Asian ethnicity, we performed skin meta-genomics (i.e., whole-exome sequencing to capture the entire multi-kingdom profile, including fungi, protists, archaea, bacteria, and viruses), comparing 36 CI patients (representing seven subtypes) with that of 15 CI age-and gender-matched controls who had no family history of CI.

resultsThis case-control study revealed 20 novel and 31 recurrent pathogenic variants. Microbiome meta-analysis showed distinct microbial populations, decreases in commensal microbiota, and higher colonization by pathogenic species associated with CI; these were correlated with increased production of inflammatory cytokines and Th17- and JAK/STAT-signaling pathways in peripheral blood mononuclear cells. In the wounds of CI patients, we identified specific changes in microbiota and alterations in inflammatory pathways, which are likely responsible for impaired wound healing.

conclusionsTogether, this research enhances our understanding of the microbiological, immunological, and molecular properties of CI and should provide critical information for improving therapeutic management of CI patients.

Indexed as

IchthyosisMicrobiotaCase-Control StudiesHumansInflammationLeukocytes, MononuclearSoutheast Asian PeopleCytokine signalingDermatologic diseasesGenetic mutationImmune system activation and profilingMicrobial infection and dysbiosisPhysiologic protein mutationsScaling and erythemaSepsisStem cell inflammatory memoryWound healing

Identifiers

PMID38627868
PMCPMC11022333
OpenAlexW4394856247

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.