Evidence map›Paper›PMID 38627580›Full record

ArticleNature structural & molecular biology2024

Molecular basis of Gabija anti-phage supramolecular assemblies.

Xiao-Yuan Yang, Zhangfei Shen, Jiale Xie, Jacelyn Greenwald, Ila Marathe, Qingpeng Lin, Wen Jun Xie, Vicki H Wysocki, Tian-Min Fu

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Xiao-Yuan Yang *Department of Biological Chemistry and Pharmacology, Center for RNA Biology, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0002-9763-1196
Zhangfei Shen *Department of Biological Chemistry and Pharmacology, Center for RNA Biology, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0002-3707-2265
Jiale XieDepartment of Biological Chemistry and Pharmacology, Center for RNA Biology, The Ohio State University, Columbus, OH, USA.
Jacelyn GreenwaldDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0009-0005-0002-0284
Ila MaratheDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.
Qingpeng LinDepartment of Biological Chemistry and Pharmacology, Center for RNA Biology, The Ohio State University, Columbus, OH, USA.
Wen Jun XieDepartment of Medicinal Chemistry, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-3982-9305
Vicki H WysockiDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.
Tian-Min FuDepartment of Biological Chemistry and Pharmacology, Center for RNA Biology, The Ohio State University, Columbus, OH, USA. Fu.978@osu.edu.ORCID http://orcid.org/0000-0002-6281-1752
The Ohio State University · USUniversity of Florida · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
MOLECULAR MECHANISMS OF V-ATPASES: ASSEMBLY, BIOGENESIS, REGULATION, AND FUNCTIONR35GM147465 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Tianmin Fu · 2022 to 2026
$2.1M
NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R35 GM147465
6 · The paper itself

Abstract

As one of the most prevalent anti-phage defense systems in prokaryotes, Gabija consists of a Gabija protein A (GajA) and a Gabija protein B (GajB). The assembly and function of the Gabija system remain unclear. Here we present cryo-EM structures of Bacillus cereus GajA and GajAB complex, revealing tetrameric and octameric assemblies, respectively. In the center of the complex, GajA assembles into a tetramer, which recruits two sets of GajB dimer at opposite sides of the complex, resulting in a 4:4 GajAB supramolecular complex for anti-phage defense. Further biochemical analysis showed that GajA alone is sufficient to cut double-stranded DNA and plasmid DNA, which can be inhibited by ATP. Unexpectedly, the GajAB displays enhanced activity for plasmid DNA, suggesting a role of substrate selection by GajB. Together, our study defines a framework for understanding anti-phage immune defense by the GajAB complex.

Indexed as

Bacillus cereusBacterial ProteinsCryoelectron MicroscopyModels, MolecularAdenosine TriphosphatePlasmidsProtein MultimerizationAdenosine TriphosphateBacterial Proteins

Identifiers

PMID38627580
PMCPMC11418746
OpenAlexW4394855524

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.