Evidence map›Paper›PMID 38627529›Full record

ArticleNature ecology & evolution2024

Ancient origin of the rod bipolar cell pathway in the vertebrate retina.

Ayana M Hellevik, Philip Mardoum, Joshua Hahn, Yvonne Kölsch, Florence D D'Orazi, Sachihiro C Suzuki, Leanne Godinho, Owen Lawrence, Fred Rieke, Karthik Shekhar and 5 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature ecology & evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

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  7. On analogies in vertebrate and insect visual systems.Nature reviews. Neuroscience · 2025
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 5 countries.

Ayana M Hellevik *Department of Biological Structure, University of Washington, Seattle, WA, USA.
Philip Mardoum *Department of Biological Structure, University of Washington, Seattle, WA, USA.
Joshua Hahn *Department of Chemical and Biomolecular Engineering; Helen Wills Neuroscience Institute; Vision Sciences Graduate Program; California Institute of Quantitative Biosciences (QB3), University of California Berkley, Berkeley, CA, USA.
Yvonne KölschDepartment Genes - Circuits - Behavior, Max Planck Institute for Biological Intelligence, Martinsried, Germany.
Florence D D'OraziDepartment of Biological Structure, University of Washington, Seattle, WA, USA.
Sachihiro C SuzukiDepartment of Biological Structure, University of Washington, Seattle, WA, USA.
Leanne GodinhoInstitute of Neuronal Cell Biology, Technische Universität München, Munich, Germany.
Owen LawrenceDepartment of Biological Structure, University of Washington, Seattle, WA, USA.
Fred RiekeDepartment of Physiology and Biophysics, University of Washington, Seattle, WA, USA.
Karthik ShekharDepartment of Chemical and Biomolecular Engineering; Helen Wills Neuroscience Institute; Vision Sciences Graduate Program; California Institute of Quantitative Biosciences (QB3), University of California Berkley, Berkeley, CA, USA.
Joshua R SanesDepartment of Molecular and Cellular Biology, and Center for Brain Science, Harvard University, Cambridge, MA, USA.
Herwig BaierDepartment Genes - Circuits - Behavior, Max Planck Institute for Biological Intelligence, Martinsried, Germany.ORCID http://orcid.org/0000-0002-7268-0469
Tom BadenSchool of Life Sciences, University of Sussex, Brighton, UK.ORCID http://orcid.org/0000-0003-2808-4210
Rachel O WongDepartment of Biological Structure, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-5089-6296
Takeshi YoshimatsuDepartment of Ophthalmology and Visual Sciences, Washington University in St Louis School of Medicine, St Louis, MO, USA. takeshi@wustl.edu.ORCID http://orcid.org/0000-0002-4939-2020
University of Washington · USMax Planck Institute of Neurobiology · DEQB3 · USHarvard University · USTechnical University of Munich · DEUniversity of Sussex · GBWashington University in St. Louis · US

Funding

Comprehensive Classification Of Neuronal Subtypes By Single Cell TranscriptomicsU01MH105960 · NIMH · HARVARD UNIVERSITY · PI REGEV, AVIV, SANES, JOSHUA R · 2014 to 2016
$4.5M
In Vivo Analysis of the Developing Vertebrate RetinaR01EY014358 · NEI · WASHINGTON UNIVERSITY · PI WONG, RACHEL O · 2003 to 2016
$4.3M
Combinatorial roles of cadherins in retinal circuit assembly.R01EY022073 · NEI · HARVARD UNIVERSITY · PI SANES, JOSHUA R · 2012 to 2020
$3.7M
Uncovering the molecular identity of retinal cell types, and their responses to nerve injury using single-cell transcriptomicsR00EY028625 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHEKHAR, KARTHIK · 2020 to 2022
$740k
Deutsche Forschungsgemeinschaft (German Research Foundation) 408885537EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) ERC-StG 677687Leverhulme Trust PLP-2017-005NEI NIH HHS R00 EY028625RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/R014817/1U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY022073U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) EY14358U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) HD07183U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) R00EY028625U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) U01MH105960Wellcome Trust (Wellcome) U01MH105960
6 · The paper itself

Abstract

Vertebrates rely on rod photoreceptors for vision in low-light conditions. The specialized downstream circuit for rod signalling, called the primary rod pathway, is well characterized in mammals, but circuitry for rod signalling in non-mammals is largely unknown. Here we demonstrate that the mammalian primary rod pathway is conserved in zebrafish, which diverged from extant mammals ~400 million years ago. Using single-cell RNA sequencing, we identified two bipolar cell types in zebrafish that are related to mammalian rod bipolar cell (RBCs), the only bipolar type that directly carries rod signals from the outer to the inner retina in the primary rod pathway. By combining electrophysiology, histology and ultrastructural reconstruction of the zebrafish RBCs, we found that, similar to mammalian RBCs, both zebrafish RBC types connect with all rods in their dendritic territory and provide output largely onto amacrine cells. The wiring pattern of the amacrine cells postsynaptic to one RBC type is strikingly similar to that of mammalian RBCs and their amacrine partners, suggesting that the cell types and circuit design of the primary rod pathway emerged before the divergence of teleost fish and mammals. The second RBC type, which forms separate pathways, was either lost in mammals or emerged in fish.

Indexed as

Retinal Bipolar CellsRetinal Rod Photoreceptor CellsZebrafishAnimalsBiological EvolutionMammalsRetina

Identifiers

PMID38627529
OpenAlexW4394854574

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.