Evidence map›Paper›PMID 38626875›Full record

ReviewLaboratory investigation; a journal of technical methods and pathology2024

Advancing Precision Medicine: Algebraic Topology and Differential Geometry in Radiology and Computational Pathology.

Richard M Levenson, Yashbir Singh, Bastian Rieck, Quincy A Hathaway, Colleen Farrelly, Jennifer Rozenblit, Prateek Prasanna, Bradley Erickson, Ashok Choudhary, Gunnar Carlsson and 1 more

Abstract readReview
In one paragraph

Review in Laboratory investigation; a journal of technical methods and pathology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Richard M LevensonDepartment of Pathology and Laboratory Medicine, University of California Davis, Davis, California. Electronic address: rmlevenson@ucdavis.edu.
Yashbir SinghDepartment of Radiology, Mayo Clinic, Rochester, Minnesota. Electronic address: singh.yashbir@mayo.edu.
Bastian RieckHelmholtz Munich and Technical University of Munich, Munich, Germany.
Quincy A HathawayDepartment of Medical Education, West Virginia University, Morgantown, West Virginia.
Colleen FarrellyPost Urban Ventures, London, United Kingdom.
Jennifer RozenblitDepartment of Mathematics, The University of Texas, Austin, Texas.
Prateek PrasannaDepartment of Biomedical Informatics, Stony Brook University, Stony Brook, New York.
Bradley EricksonDepartment of Radiology, Mayo Clinic, Rochester, Minnesota.
Ashok ChoudharyDepartment of Surgery, Mayo Clinic, Rochester, Minnesota.
Gunnar CarlssonDepartment of Mathematics, Stanford University, Stanford, California.
Deepa SarkarInstitute of Genomic Health, Ichan school of Medicine, Mount Sinai, New York.

Funding

3D Microscopy with Ultraviolet Surface Excitation (3D-MUSE)R01EB028635 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI LEVENSON, RICHARD M., WILSON, DAVID LYNN · 2019 to 2023
$2.7M
Breast core-needle diagnostics in LMICs via millifluidics and direct-to-digital imaging: development and validation in GhanaU01CA269191 · NCI · UNIVERSITY OF WASHINGTON · PI RICHARD M. LEVENSON, Eric J Seibel · 2023 to 2026
$2.4M
Imaging and informatics techniques to spatially map tumor-associated collagen: novel cancer diagnostic tools (2 of 2)R33CA202881 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEVENSON, RICHARD M. · 2017 to 2019
$1.3M
IMAT-ITCR Collaboration: Combining FIBI and topological data analysis: Synergistic approaches for tumor structural microenvironment explorationR33CA278544 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ICZKOWSKI, KENNETH A · 2023 to 2025
$988k
NCI NIH HHS R33 CA202881NCI NIH HHS R33 CA278544NCI NIH HHS U01 CA269191NIBIB NIH HHS R01 EB028635
6 · The paper itself

Abstract

Precision medicine aims to provide personalized care based on individual patient characteristics, rather than guideline-directed therapies for groups of diseases or patient demographics. Images-both radiology- and pathology-derived-are a major source of information on presence, type, and status of disease. Exploring the mathematical relationship of pixels in medical imaging ("radiomics") and cellular-scale structures in digital pathology slides ("pathomics") offers powerful tools for extracting both qualitative and, increasingly, quantitative data. These analytical approaches, however, may be significantly enhanced by applying additional methods arising from fields of mathematics such as differential geometry and algebraic topology that remain underexplored in this context. Geometry's strength lies in its ability to provide precise local measurements, such as curvature, that can be crucial for identifying abnormalities at multiple spatial levels. These measurements can augment the quantitative features extracted in conventional radiomics, leading to more nuanced diagnostics. By contrast, topology serves as a robust shape descriptor, capturing essential features such as connected components and holes. The field of topological data analysis was initially founded to explore the shape of data, with functional network connectivity in the brain being a prominent example. Increasingly, its tools are now being used to explore organizational patterns of physical structures in medical images and digitized pathology slides. By leveraging tools from both differential geometry and algebraic topology, researchers and clinicians may be able to obtain a more comprehensive, multi-layered understanding of medical images and contribute to precision medicine's armamentarium.

Indexed as

Precision MedicineHumansImage Processing, Computer-AssistedRadiologygeometrypathomicsprecision medicineradiomicstopological data analysis

Identifiers

PMID38626875
PMCPMC12054847

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.