Evidence map›Paper›PMID 38625936›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation.

J Paulo Lorenzo, Linda Molla, Elias Moris Amro, Ignacio L Ibarra, Sandra Ruf, Cedrik Neber, Christos Gkougkousis, Jana Ridani, Poorani Ganesh Subramani, Jonathan Boulais and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

J Paulo Lorenzo *Division of Immune Diversity, German Cancer Research Center, Heidelberg 69120, Germany.ORCID 0000-0002-8957-1402
Linda Molla *Laboratory of Lymphocyte Biology, The Rockefeller University, New York, NY 10065.
Elias Moris Amro *Division of Immune Diversity, German Cancer Research Center, Heidelberg 69120, Germany.ORCID 0009-0001-7405-9756
Ignacio L IbarraStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Sandra RufDivision of Immune Diversity, German Cancer Research Center, Heidelberg 69120, Germany.
Cedrik NeberDivision of Immune Diversity, German Cancer Research Center, Heidelberg 69120, Germany.ORCID 0009-0002-8525-8088
Christos GkougkousisDivision of Immune Diversity, German Cancer Research Center, Heidelberg 69120, Germany.ORCID 0009-0009-1640-3457
Jana RidaniInstitut de Recherches Cliniques de Montréal, Montréal, QC H2W 1R7, Canada.
Poorani Ganesh SubramaniInstitut de Recherches Cliniques de Montréal, Montréal, QC H2W 1R7, Canada.
Jonathan BoulaisInstitut de Recherches Cliniques de Montréal, Montréal, QC H2W 1R7, Canada.
Dewi HarjantoLaboratory of Lymphocyte Biology, The Rockefeller University, New York, NY 10065.
Alin VonicaDepartment of Biology, Nazareth University, Rochester, NY 14618.ORCID 0000-0001-8044-9569
Javier M Di NoiaInstitut de Recherches Cliniques de Montréal, Montréal, QC H2W 1R7, Canada.ORCID 0000-0003-2896-0321
Christoph DieterichKlaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg, Heidelberg 69120, Germany.ORCID 0000-0001-9468-6311
Judith B ZauggStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
F Nina PapavasiliouDivision of Immune Diversity, German Cancer Research Center, Heidelberg 69120, Germany.ORCID 0000-0002-5971-7909
German Cancer Research Center · DEMontreal Clinical Research Institute · CARockefeller University · USEuropean Molecular Biology Laboratory · DEHeidelberg University · DEHelmholtz Zentrum München · DENazareth College · US

Funding

Canadian Government | Canadian Institutes of Health Research (CIHR) PJT 155944Helmholtz-Fonds (Helmholtz-Fonds e.V.)
6 · The paper itself

Abstract

The apolipoprotein B messenger RNA editing enzyme, catalytic polypeptide (APOBEC) family is composed of nucleic acid editors with roles ranging from antibody diversification to RNA editing. APOBEC2, a member of this family with an evolutionarily conserved nucleic acid-binding cytidine deaminase domain, has neither an established substrate nor function. Using a cellular model of muscle differentiation where APOBEC2 is inducibly expressed, we confirmed that APOBEC2 does not have the attributed molecular functions of the APOBEC family, such as RNA editing, DNA demethylation, and DNA mutation. Instead, we found that during muscle differentiation APOBEC2 occupied a specific motif within promoter regions; its removal from those regions resulted in transcriptional changes. Mechanistically, these changes reflect the direct interaction of APOBEC2 with histone deacetylase (HDAC) transcriptional corepressor complexes. We also found that APOBEC2 could bind DNA directly, in a sequence-specific fashion, suggesting that it functions as a recruiter of HDAC to specific genes whose promoters it occupies. These genes are normally suppressed during muscle cell differentiation, and their suppression may contribute to the safeguarding of muscle cell fate. Altogether, our results reveal a unique role for APOBEC2 within the APOBEC family.

Indexed as

ChromatinMuscle ProteinsAnimalsAPOBEC-1 DeaminaseAPOBEC DeaminasesCell DifferentiationCytidine DeaminaseDNAMiceMuscle Fibers, SkeletalMyoblastsRNA, MessengerAPOBEC-1 DeaminaseApobec2 protein, mouseAPOBEC DeaminasesChromatinCytidine DeaminaseDNAMuscle ProteinsRNA, MessengerAPOBEC familyDNA bindingmuscle differentiationsafeguard factortranscriptional regulator

Identifiers

PMID38625936
PMCPMC11047093
OpenAlexW4394841470

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.