Evidence map›Paper›PMID 38624759›Full record

ArticleGranular computing2023

Enhancing drug-drug interaction prediction by three-way decision and knowledge graph embedding.

Xinkun Hao, Qingfeng Chen, Haiming Pan, Jie Qiu, Yuxiao Zhang, Qian Yu, Zongzhao Han, Xiaojing Du

Abstract read
In one paragraph

Article in Granular computing, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xinkun HaoSchool of Computer, Electronics and Information, Guangxi University, Nanning, 530004 Guangxi China.
Qingfeng ChenSchool of Computer, Electronics and Information, Guangxi University, Nanning, 530004 Guangxi China.
Haiming PanSchool of Computer, Electronics and Information, Guangxi University, Nanning, 530004 Guangxi China.
Jie QiuSchool of Computer, Electronics and Information, Guangxi University, Nanning, 530004 Guangxi China.
Yuxiao ZhangSchool of Computer, Electronics and Information, Guangxi University, Nanning, 530004 Guangxi China.
Qian YuSchool of Computer, Electronics and Information, Guangxi University, Nanning, 530004 Guangxi China.
Zongzhao HanSchool of Computer, Electronics and Information, Guangxi University, Nanning, 530004 Guangxi China.
Xiaojing DuSchool of Computer, Electronics and Information, Guangxi University, Nanning, 530004 Guangxi China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drug-Drug interaction (DDI) prediction is essential in pharmaceutical research and clinical application. Existing computational methods mainly extract data from multiple resources and treat it as binary classification. However, this cannot unambiguously tell the boundary between positive and negative samples owing to the incompleteness and uncertainty of derived data. A granular computing method called three-way decision is proved to be effective in making uncertain decision, but it relies on supplementary information to make delay decision. Recently, biomedical knowledge graph has been regarded as an important source to obtain abundant supplementary information about drugs. This paper proposes a three-way decision-based method called 3WDDI, in combination with knowledge graph embedding as supplementary features to enhance DDI prediction. The drug pairs are divided into positive, negative and boundary regions by Convolutional Neural Network (CNN) according to drug chemical structure feature. Further, delay decision is made for objects in the boundary region by integrating knowledge graph embedding feature to promote the accuracy of decision-making. The empirical results show that 3WDDI yields up to 0.8922, 0.9614, 0.9582, 0.8930 for Accuracy, AUPR, AUC and F1-score, respectively, and outperforms several baseline models.

Indexed as

Convolutional neural networkDrug–drug interactionsKnowledge graphThree-way decision

Identifiers

PMID38624759
PMCPMC8913867

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.