Evidence map›Paper›PMID 38624181›Full record

ArticleThe ISME journal2024

Iron limitation of heterotrophic bacteria in the California Current System tracks relative availability of organic carbon and iron.

Lauren E Manck, Tyler H Coale, Brandon M Stephens, Kiefer O Forsch, Lihini I Aluwihare, Christopher L Dupont, Andrew E Allen, Katherine A Barbeau

Erratum issuedAbstract read
In one paragraph

Article in The ISME journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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  10. In Vitro Ferrophilic Responses ofMicroorganisms · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Lauren E ManckGeosciences Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, United States.
Tyler H CoaleIntegrative Oceanography Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, United States.
Brandon M StephensGeosciences Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, United States.
Kiefer O ForschGeosciences Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, United States.
Lihini I AluwihareGeosciences Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, United States.
Christopher L DupontDepartment of Environment and Sustainability, J. Craig Venter Institute, La Jolla, CA 92037, United States.
Andrew E AllenIntegrative Oceanography Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, United States.
Katherine A BarbeauGeosciences Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, United States.

Funding

NSF DGE-1144086NSF OCE-1026607NSF OCE-1558453NSF OCE-1558841NSF OCE-1756884Simons Collaboration on Principles of Microbial Ecosystems 970820Simons Postdoctoral Fellowship in Marine Microbial Ecology 729162
6 · The paper itself

Abstract

Iron is an essential nutrient for all microorganisms of the marine environment. Iron limitation of primary production has been well documented across a significant portion of the global surface ocean, but much less is known regarding the potential for iron limitation of the marine heterotrophic microbial community. In this work, we characterize the transcriptomic response of the heterotrophic bacterial community to iron additions in the California Current System, an eastern boundary upwelling system, to detect in situ iron stress of heterotrophic bacteria. Changes in gene expression in response to iron availability by heterotrophic bacteria were detected under conditions of high productivity when carbon limitation was relieved but when iron availability remained low. The ratio of particulate organic carbon to dissolved iron emerged as a biogeochemical proxy for iron limitation of heterotrophic bacteria in this system. Iron stress was characterized by high expression levels of iron transport pathways and decreased expression of iron-containing enzymes involved in carbon metabolism, where a majority of the heterotrophic bacterial iron requirement resides. Expression of iron stress biomarkers, as identified in the iron-addition experiments, was also detected insitu. These results suggest iron availability will impact the processing of organic matter by heterotrophic bacteria with potential consequences for the marine biological carbon pump.

Indexed as

BacteriaCarbonHeterotrophic ProcessesIronSeawaterCaliforniaMicrobiotaCarbonIronbiogeochemistrybiological carbon pumpCalifornia Current Systemcarbonheterotrophic bacteriaironmarinetranscriptomics

Identifiers

PMID38624181
PMCPMC11069385

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.