Evidence map›Paper›PMID 38623916›Full record

ArticleJournal of chemical information and modeling2024

Biomolecular Adsorption on Nanomaterials: Combining Molecular Simulations with Machine Learning.

Marzieh Saeedimasine, Roja Rahmani, Alexander P Lyubartsev

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Machine Learning and Artificial Intelligence in Nanomedicine.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Marzieh SaeedimasineDepartment of Materials and Environmental Chemistry, Stockholm University, Stockholm SE-106 91, Sweden.ORCID 0000-0003-3302-6410
Roja RahmaniDepartment of Materials and Environmental Chemistry, Stockholm University, Stockholm SE-106 91, Sweden.
Alexander P LyubartsevDepartment of Materials and Environmental Chemistry, Stockholm University, Stockholm SE-106 91, Sweden.ORCID 0000-0002-9390-5719

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adsorption free energies of 32 small biomolecules (amino acids side chains, fragments of lipids, and sugar molecules) on 33 different nanomaterials, computed by the molecular dynamics - metadynamics methodology, have been analyzed using statistical machine learning approaches. Multiple unsupervised learning algorithms (principal component analysis, agglomerative clustering, and K-means) as well as supervised linear and nonlinear regression algorithms (linear regression, AdaBoost ensemble learning, artificial neural network) have been applied. As a result, a small set of biomolecules has been identified, knowledge of adsorption free energies of which to a specific nanomaterial can be used to predict, within the developed machine learning model, adsorption free energies of other biomolecules. Furthermore, the methodology of grouping of nanomaterials according to their interactions with biomolecules has been presented.

Indexed as

Machine LearningMolecular Dynamics SimulationNanostructuresAdsorptionAlgorithmsAmino AcidsNeural Networks, ComputerThermodynamicsAmino Acids

Identifiers

PMID38623916
PMCPMC11094735

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.