Evidence map›Paper›PMID 38623540›Full record

ArticleClinical & translational immunology2024

SARS-CoV-2-infected human airway epithelial cell cultures uniquely lack interferon and immediate early gene responses caused by other coronaviruses.

Ying Wang, Melissa Thaler, Clarisse Salgado-Benvindo, Nathan Ly, Anouk A Leijs, Dennis K Ninaber, Philip M Hansbro, Fia Boedijono, Martijn J van Hemert, Pieter S Hiemstra and 2 more

Open access · goldAbstract read
In one paragraph

Article in Clinical & translational immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Ying WangPulmoScience Lab, Department of Pulmonology Leiden University Medical Center Leiden The Netherlands.
Melissa ThalerDepartment of Medical Microbiology Leiden University Medical Center Leiden The Netherlands.
Clarisse Salgado-BenvindoDepartment of Medical Microbiology Leiden University Medical Center Leiden The Netherlands.ORCID https://orcid.org/0000-0002-2244-7992
Nathan LyRespiratory Bioinformatics and Molecular Biology (RBMB), School of Life Sciences University of Technology Sydney Sydney NSW Australia.
Anouk A LeijsDepartment of Medical Microbiology Leiden University Medical Center Leiden The Netherlands.
Dennis K NinaberPulmoScience Lab, Department of Pulmonology Leiden University Medical Center Leiden The Netherlands.
Philip M HansbroCentre for Inflammation Centenary Institute and University of Technology Sydney, Faculty of Science Sydney NSW Australia.
Fia BoedijonoCentre for Inflammation Centenary Institute and University of Technology Sydney, Faculty of Science Sydney NSW Australia.
Martijn J van HemertDepartment of Medical Microbiology Leiden University Medical Center Leiden The Netherlands.
Pieter S HiemstraPulmoScience Lab, Department of Pulmonology Leiden University Medical Center Leiden The Netherlands.
Anne M van der DoesPulmoScience Lab, Department of Pulmonology Leiden University Medical Center Leiden The Netherlands.ORCID https://orcid.org/0000-0002-1613-106X
Alen FaizRespiratory Bioinformatics and Molecular Biology (RBMB), School of Life Sciences University of Technology Sydney Sydney NSW Australia.
Leiden University Medical Center · NLUniversity of Technology Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objectives: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a member of a class of highly pathogenic coronaviruses. The large family of coronaviruses, however, also includes members that cause only mild symptoms, like human coronavirus-229E (HCoV-229E) or OC43 (HCoV-OC43). Unravelling how molecular (and cellular) pathophysiology differs between highly and low pathogenic coronaviruses is important for the development of therapeutic strategies. Methods: Here, we analysed the transcriptome of primary human bronchial epithelial cells (PBEC), differentiated at the air-liquid interface (ALI) after infection with SARS-CoV-2, SARS-CoV, Middle East Respiratory Syndrome (MERS)-CoV and HCoV-229E using bulk RNA sequencing. Results: ALI-PBEC were efficiently infected by all viruses, and SARS-CoV, MERS-CoV and HCoV-229E infection resulted in a largely similar transcriptional response. The response to SARS-CoV-2 infection differed markedly as it uniquely lacked the increase in expression of immediate early genes, including Conclusion: Our results demonstrate a previously unknown suppression of a host response gene set by SARS-CoV-2 and confirm a difference in interferon-related gene expression between highly pathogenic and low pathogenic coronaviruses.

Indexed as

coronavirusimmediate early genesprimary airway epithelial cellsRNA sequencingSARS‐CoV‐2

Identifiers

PMID38623540
PMCPMC11017760
OpenAlexW4394813930

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.