Evidence map›Paper›PMID 38622639›Full record

ArticleVeterinary research2024

Genome analysis of Streptococcus spp. isolates from animals in pre-antibiotic era with respect to antibiotic susceptibility and virulence gene profiles.

Ji-Yeon Hyeon, Junwon Kim, David H Chung, Zeinab H Helal, Robert Polkowski, Dong-Hun Lee, Guillermo R Risatti

Open access · goldAbstract read
In one paragraph

Article in Veterinary research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Species Identification and Antimicrobial Resistance ofAnimals : an open access journal from MDPI · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Ji-Yeon HyeonCollege of Veterinary Medicine, Konkuk University, Seoul, Republic of Korea.
Junwon KimDepartment of Pathobiology and Veterinary Science, College of Agriculture, Health and Natural Resources, University of Connecticut, Storrs, CT, USA.
David H ChungDepartment of Pathobiology and Veterinary Science, College of Agriculture, Health and Natural Resources, University of Connecticut, Storrs, CT, USA.
Zeinab H HelalConnecticut Veterinary Medical Diagnostic Laboratory, Department of Pathobiology and Veterinary Science, College of Agriculture, Health and Natural Resources, University of Connecticut, Storrs, CT, USA.
Robert PolkowskiConnecticut Veterinary Medical Diagnostic Laboratory, Department of Pathobiology and Veterinary Science, College of Agriculture, Health and Natural Resources, University of Connecticut, Storrs, CT, USA.
Dong-Hun Lee *College of Veterinary Medicine, Konkuk University, Seoul, Republic of Korea. donghunlee@konkuk.ac.kr.ORCID http://orcid.org/0000-0002-0820-7378
Guillermo R Risatti *Department of Pathobiology and Veterinary Science, College of Agriculture, Health and Natural Resources, University of Connecticut, Storrs, CT, USA. guillermo.risatti@uconn.edu.
University of Connecticut · USKonkuk University · KR

Funding

Vet-LIRN: Improving infrastructure and response capabilities at the Connecticut Veterinary Medical Diagnostic LaboratoryU18FD006182 · FDA · UNIVERSITY OF CONNECTICUT STORRS · PI Guillermo Roberto Risatti · 2017 to 2026
$320k
Connecticut Veterinary Medical Diagnostic LaboratoryU18FD004640 · FDA · UNIVERSITY OF CONNECTICUT STORRS · PI SMYTH, JOAN A · 2012 to 2016
$97k
Enhancing Antimicrobial Resistance Surveillance in companion animals at the Connecticut Veterinary Medical Diagnostic LaboratoryU18FD006995 · FDA · UNIVERSITY OF CONNECTICUT STORRS · PI RISATTI, GUILLERMO ROBERTO · 2020 to 2020
$60k
FDA HHS U18 FD004640FDA HHS U18 FD006182FDA HHS U18 FD006995University of Connecticut SPS #180229University of Connecticut SPS # 181033
6 · The paper itself

Abstract

Lyophilized Streptococcus spp. isolates (n = 50) from animal samples submitted to the diagnostic laboratory at the University of Connecticut in the 1940s were revivified to investigate the genetic characteristics using whole-genome sequencing (WGS). The Streptococcus spp. isolates were identified as follows; S. agalactiae (n = 14), S. dysgalactiae subsp. dysgalactiae (n = 10), S. dysgalactiae subsp. equisimils (n = 5), S. uberis (n = 8), S. pyogenes (n = 7), S. equi subsp. zooepidemicus (n = 4), S. oralis (n = 1), and S. pseudoporcinus (n = 1). We identified sequence types (ST) of S. agalactiae, S. dysgalactiae, S. uberis, S. pyogenes, and S. equi subsp. zooepidemicus and reported ten novel sequence types of those species. WGS analysis revealed that none of Streptococcus spp. carried antibiotic resistance genes. However, tetracycline resistance was observed in four out of 15 S. dysgalactiae isolates and in one out of four S. equi subsp. zooepidemicus isolate. This data highlights that antimicrobial resistance is pre-existed in nature before the use of antibiotics. The draft genome sequences of isolates from this study and 426 complete genome sequences of Streptococcus spp. downloaded from BV-BRC and NCBI GenBank database were analyzed for virulence gene profiles and phylogenetic relationships. Different Streptococcus species demonstrated distinct virulence gene profiles, with no time-related variations observed. Phylogenetic analysis revealed high genetic diversity of Streptococcus spp. isolates from the 1940s, and no clear spatio-temporal clustering patterns were observed among Streptococcus spp. analyzed in this study. This study provides an invaluable resource for studying the evolutionary aspects of antibiotic resistance acquisition and virulence in Streptococcus spp.

Indexed as

Anti-Bacterial AgentsStreptococcal InfectionsAnimalsPhylogenyStreptococcusVirulenceAnti-Bacterial Agentsantibiotic resistancepre-antibiotic eraStreptococcus spp.virulence profilewhole genome sequencing

Identifiers

PMID38622639
PMCPMC11017511
OpenAlexW4394814127

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.