Evidence map›Paper›PMID 38622441›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2024

Characterisation and mapping of a Globodera pallida resistance derived from the wild potato species Solanum spegazzinii.

Ulrike Gartner, Miles R Armstrong, Sanjeev K Sharma, John T Jones, Vivian C Blok, Ingo Hein, Glenn J Bryan

Open access · hybridAbstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Identification by GWAS of marker haplotypes relevant to breed potato for Globodera pallida resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ulrike GartnerCell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.ORCID http://orcid.org/0009-0005-4089-5683
Miles R ArmstrongSchool of Life Sciences, University of Dundee, Dundee, UK.
Sanjeev K SharmaCell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
John T JonesCell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Vivian C BlokCell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Ingo HeinCell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK. ingo.hein@hutton.ac.uk.ORCID https://orcid.org/0000-0002-0128-2084
Glenn J BryanCell and Molecular Sciences Department, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK. glenn.bryan@hutton.ac.uk.ORCID https://orcid.org/0000-0002-7752-5740
James Hutton Institute · GBUniversity of Dundee · GB

Funding

Biotechnology and Biological Sciences Research Council BB/S015663/1Biotechnology and Biological Sciences Research Council BB/X009068/1
6 · The paper itself

Abstract

key messageA new resistance locus acting against the potato cyst nematode Globodera pallida was mapped to chromosome VI in the diploid wild potato species Solanum spegazzinii CPC 7195. The potato cyst nematodes (PCN) Globodera pallida and Globodera rostochiensis are economically important potato pests in almost all regions where potato is grown. One important management strategy involves deployment through introgression breeding into modern cultivars of new sources of naturally occurring resistance from wild potato species. We describe a new source of resistance to G. pallida from wild potato germplasm. The diploid species Solanum spegazzinii Bitter accession CPC 7195 shows resistance to G. pallida pathotypes Pa1 and Pa2/3. A cross and first backcross of S. spegazzinii with Solanum tuberosum Group Phureja cultivar Mayan Gold were performed, and the level of resistance to G. pallida Pa2/3 was determined in progeny clones. Bulk-segregant analysis (BSA) using generic mapping enrichment sequencing (GenSeq) and genotyping-by-sequencing were performed to identify single-nucleotide polymorphisms (SNPs) that are genetically linked to the resistance, using S. tuberosum Group Phureja clone DM1-3 516 R44 as a reference genome. These SNPs were converted into allele-specific PCR assays, and the resistance was mapped to an interval of roughly 118 kb on chromosome VI. This newly identified resistance, which we call Gpa VI

Indexed as

SolanumSolanum tuberosumTylenchoideaAnimalsPlant BreedingPlant Diseases

Identifiers

PMID38622441
PMCPMC11018675
OpenAlexW4394850536

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.