Evidence map›Paper›PMID 38622379›Full record

ArticleNature microbiology2024

DNA-targeting short Argonautes complex with effector proteins for collateral nuclease activity and bacterial population immunity.

Maria Prostova, Anna Kanevskaya, Vladimir Panteleev, Lidia Lisitskaya, Kristina V Perfilova Tugaeva, Nikolai N Sluchanko, Daria Esyunina, Andrey Kulbachinskiy

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 30 citations in OpenAlex.

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  18. Emerging tools in plant genome editing.Frontiers in genome editing · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Maria Prostova *Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia. prostovna@gmail.com.ORCID http://orcid.org/0000-0001-5630-3471
Anna Kanevskaya *Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia. annakanevskaja@yandex.ru.ORCID http://orcid.org/0009-0005-4485-0589
Vladimir PanteleevInstitute of Gene Biology, Russian Academy of Sciences, Moscow, Russia.
Lidia LisitskayaInstitute of Gene Biology, Russian Academy of Sciences, Moscow, Russia.ORCID http://orcid.org/0000-0002-5283-7983
Kristina V Perfilova TugaevaA.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia.
Nikolai N SluchankoA.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia.ORCID http://orcid.org/0000-0002-8608-1416
Daria EsyuninaInstitute of Gene Biology, Russian Academy of Sciences, Moscow, Russia.
Andrey KulbachinskiyInstitute of Gene Biology, Russian Academy of Sciences, Moscow, Russia. avkulb@yandex.ru.ORCID http://orcid.org/0000-0002-2292-6424
Institute of Gene Biology · RUA N Bach Institute of Biochemistry · RU

Funding

Russian Science Foundation (RSF) 22-14-00182
6 · The paper itself

Abstract

Two prokaryotic defence systems, prokaryotic Argonautes (pAgos) and CRISPR-Cas, detect and cleave invader nucleic acids using complementary guides and the nuclease activities of pAgo or Cas proteins. However, not all pAgos are active nucleases. A large clade of short pAgos bind nucleic acid guides but lack nuclease activity, suggesting a different mechanism of action. Here we investigate short pAgos associated with a putative effector nuclease, NbaAgo from Novosphingopyxis baekryungensis and CmeAgo from Cupriavidus metallidurans. We show that these pAgos form a heterodimeric complex with co-encoded effector nucleases (short prokaryotic Argonaute, DNase and RNase associated (SPARDA)). RNA-guided target DNA recognition unleashes the nuclease activity of SPARDA leading to indiscriminate collateral cleavage of DNA and RNA. Activation of SPARDA by plasmids or phages results in degradation of cellular DNA and cell death or dormancy, conferring target-specific population protection and expanding the range of known prokaryotic immune systems.

Indexed as

Argonaute ProteinsBacterial ProteinsBacteriophagesCRISPR-Cas SystemsDeoxyribonucleasesDNADNA, BacterialPlasmidsArgonaute ProteinsBacterial ProteinsDeoxyribonucleasesDNADNA, Bacterial

Identifiers

PMID38622379
OpenAlexW4394813264

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.