Evidence map›Paper›PMID 38622344›Full record

ArticleNature biotechnology2025

Improving microbial phylogeny with citizen science within a mass-market video game.

Roman Sarrazin-Gendron, Parham Ghasemloo Gheidari, Alexander Butyaev, Timothy Keding, Eddie Cai, Jiayue Zheng, Renata Mutalova, Julien Mounthanyvong, Yuxue Zhu, Elena Nazarova and 13 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Science and Videogames: From Scientific Dissemination to Knowledge Production.American journal of human biology : the official journal of the Human Biology Council · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Roman Sarrazin-GendronSchool of Computer Science, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0000-0002-0291-547X
Parham Ghasemloo GheidariSchool of Computer Science, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0000-0002-2119-0136
Alexander ButyaevSchool of Computer Science, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0009-0005-8028-0915
Timothy KedingSchool of Computer Science, McGill University, Montréal, QC, Canada.
Eddie CaiSchool of Computer Science, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0000-0002-3341-9671
Jiayue ZhengSchool of Computer Science, McGill University, Montréal, QC, Canada.
Renata MutalovaSchool of Computer Science, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0000-0001-7838-1585
Julien MounthanyvongSchool of Computer Science, McGill University, Montréal, QC, Canada.
Yuxue ZhuSchool of Computer Science, McGill University, Montréal, QC, Canada.
Elena NazarovaSchool of Computer Science, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0009-0009-2095-5203
Chrisostomos DrogarisSchool of Computer Science, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0000-0001-5726-4806
Kornél ErhartMassively Multiplayer Online Science, Gryon, Switzerland.ORCID http://orcid.org/0000-0002-9342-2354
Borderlands Science Development Team
Borderlands Science players
Amélie BrouilletteGearbox Studio Québec, Québec, QC, Canada.ORCID http://orcid.org/0009-0003-3264-3414
Gabriel RichardGearbox Studio Québec, Québec, QC, Canada.ORCID http://orcid.org/0000-0003-2879-3906
Randy PitchfordGearbox Entertainment Company, Frisco, TX, USA.
Sébastien CaisseGearbox Studio Québec, Québec, QC, Canada.ORCID http://orcid.org/0000-0002-1575-1865
Mathieu BlanchetteSchool of Computer Science, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0000-0002-9555-860X
Daniel McDonaldDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-0876-9060
Rob KnightDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-0975-9019
Attila SzantnerSchool of Computer Science, McGill University, Montréal, QC, Canada.ORCID http://orcid.org/0000-0002-3510-2774
Jérôme WaldispühlSchool of Computer Science, McGill University, Montréal, QC, Canada. jerome.waldispuhl@mcgill.ca.ORCID http://orcid.org/0000-0002-2561-7117

Funding

Mapping host-microbe-metabolite interactions in 3D to find diet-derived enhancers of immunityDP1AT010885 · NCCIH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KNIGHT, ROB · 2019 to 2023
$5.5M
NCCIH NIH HHS DP1 AT010885
6 · The paper itself

Abstract

Citizen science video games are designed primarily for users already inclined to contribute to science, which severely limits their accessibility for an estimated community of 3 billion gamers worldwide. We created Borderlands Science (BLS), a citizen science activity that is seamlessly integrated within a popular commercial video game played by tens of millions of gamers. This integration is facilitated by a novel game-first design of citizen science games, in which the game design aspect has the highest priority, and a suitable task is then mapped to the game design. BLS crowdsources a multiple alignment task of 1 million 16S ribosomal RNA sequences obtained from human microbiome studies. Since its initial release on 7 April 2020, over 4 million players have solved more than 135 million science puzzles, a task unsolvable by a single individual. Leveraging these results, we show that our multiple sequence alignment simultaneously improves microbial phylogeny estimations and UniFrac effect sizes compared to state-of-the-art computational methods. This achievement demonstrates that hyper-gamified scientific tasks attract massive crowds of contributors and offers invaluable resources to the scientific community.

Indexed as

Citizen ScienceMicrobiotaPhylogenyVideo GamesCrowdsourcingHumansRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID38622344
PMCPMC11738981

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.