Evidence map›Paper›PMID 38619504›Full record

ArticleeLife2024

Hammerhead-type FXR agonists induce an enhancer RNA

Jinjing Chen, Ruoyu Wang, Feng Xiong, Hao Sun, Byron Kemper, Wenbo Li, Jongsook Kemper

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jinjing Chen *Department of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, United States.ORCID https://orcid.org/0000-0002-0612-8553
Ruoyu Wang *Department of Biochemistry and Molecular Biology, McGovern Medical School, University of Texas Health Science Center, Houston, United States.ORCID https://orcid.org/0000-0002-3644-1284
Feng XiongDepartment of Biochemistry and Molecular Biology, McGovern Medical School, University of Texas Health Science Center, Houston, United States.
Hao SunDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, United States.
Byron KemperDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, United States.
Wenbo LiDepartment of Biochemistry and Molecular Biology, McGovern Medical School, University of Texas Health Science Center, Houston, United States.ORCID https://orcid.org/0000-0002-9042-5664
Jongsook KemperDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, United States.ORCID https://orcid.org/0000-0002-5534-0286
University of Illinois Urbana-Champaign · USThe University of Texas Health Science Center at Houston · US

Funding

Regulation of Cholesterol Catabolism by Bile AcidsR01DK062777 · NIDDK · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2003 to 2021
$5.8M
Coordination of gut-liver bile acid signaling by FXRR01DK095842 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2012 to 2021
$3.0M
Mechanisms Underlying Enhancer Rnp Mediated Gene Regulation And Genome OrganizationR01GM136922 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LI, WENBO · 2020 to 2024
$2.0M
Condensin-mediated enhancer and chromatin architectural control of breast cancer gene transcriptionK22CA204468 · NCI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LI, WENBO · 2017 to 2019
$486k
NCI NIH HHS K22 CA204468NIDDK NIH HHS R01 DK062777NIDDK NIH HHS R01 DK095842NIGMS NIH HHS R01 GM136922NIH HHS K22CA204468NIH HHS R01 DK062777NIH HHS R01 DK095842NIH HHS R01GM136922NLM NIH HHS HHSN276201200017C
6 · The paper itself

Abstract

The nuclear receptor, farnesoid X receptor (FXR/NR1H4), is increasingly recognized as a promising drug target for metabolic diseases, including nonalcoholic steatohepatitis (NASH). Protein-coding genes regulated by FXR are well known, but whether FXR also acts through regulation of long non-coding RNAs (lncRNAs), which vastly outnumber protein-coding genes, remains unknown. Utilizing RNA-seq and global run-on sequencing (GRO-seq) analyses in mouse liver, we found that FXR activation affects the expression of many RNA transcripts from chromatin regions bearing enhancer features. Among these we discovered a previously unannotated liver-enriched enhancer-derived lncRNA (eRNA), termed FXR-induced non-coding RNA (

Indexed as

Non-alcoholic Fatty Liver DiseaseRNA, Long NoncodingAnimalsBirdsEnhancer RNAsMiceEnhancer RNAsRNA, Long Noncodingenhancer RNAFXRhumanmedicinemouseNASHtropifexor

Identifiers

PMID38619504
PMCPMC11018349
OpenAlexW4390971732

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.