Evidence map›Paper›PMID 38619323›Full record

ArticleDevelopment (Cambridge, England)2024

CHD4 and SMYD1 repress common transcriptional programs in the developing heart.

Wei Shi, Lauren K Wasson, Kerry M Dorr, Zachary L Robbe, Caralynn M Wilczewski, Austin J Hepperla, Ian J Davis, Christine E Seidman, Jonathan G Seidman, Frank L Conlon

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Human mutation · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Wei ShiDepartment of Biology and Genetics, McAllister Heart Institute, UNC-Chapel Hill, Chapel Hill, NC 27599, USA.
Lauren K WassonDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Kerry M DorrDepartment of Biology and Genetics, McAllister Heart Institute, UNC-Chapel Hill, Chapel Hill, NC 27599, USA.
Zachary L RobbeDepartment of Biology and Genetics, McAllister Heart Institute, UNC-Chapel Hill, Chapel Hill, NC 27599, USA.
Caralynn M WilczewskiDepartment of Biology and Genetics, McAllister Heart Institute, UNC-Chapel Hill, Chapel Hill, NC 27599, USA.
Austin J HepperlaLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Ian J DavisLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Christine E SeidmanDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Jonathan G SeidmanDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Frank L ConlonDepartment of Biology and Genetics, McAllister Heart Institute, UNC-Chapel Hill, Chapel Hill, NC 27599, USA.ORCID 0000-0002-5027-0397
University of North Carolina at Chapel Hill · USBrigham and Women's Hospital · USHarvard University · USHoward Hughes Medical Institute · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Regulation of Cardiac Development in Health and DiseaseUM1HL098166 · NHLBI · HARVARD MEDICAL SCHOOL · PI PENNACCHIO, LEN ALEXANDER, PU, WILLIAM TSWENCHING · 2015 to 2019
$4.4M
Cardiac interaction networks as determinants of transcriptional specificityR01HD089275 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CONLON, FRANK LEO, CRISTEA, ILEANA M. · 2017 to 2021
$2.9M
Gene Regulatory Networks for Cardiac MorphogenesisR01HL126509 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CONLON, FRANK LEO, CRISTEA, ILEANA M. · 2017 to 2020
$2.5M
The Genomic Basis of Congenital Heart Disease and Neurodevelopmental OutcomesUM1HL098147 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI NEWBURGER, JANE W., ROBERTS, AMY E · 2015 to 2019
$2.4M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA016086NHLBI NIH HHS R01 HL126509NHLBI NIH HHS UM1 HL098147NHLBI NIH HHS UM1 HL098166NICHD NIH HHS R01 HD089275NIH HHS R01HL126509NIH HHS R01 R01HL126509
6 · The paper itself

Abstract

Regulation of chromatin states is essential for proper temporal and spatial gene expression. Chromatin states are modulated by remodeling complexes composed of components that have enzymatic activities. CHD4 is the catalytic core of the nucleosome remodeling and deacetylase (NuRD) complex, which represses gene transcription. However, it remains to be determined how CHD4, a ubiquitous enzyme that remodels chromatin structure, functions in cardiomyocytes to maintain heart development. In particular, whether other proteins besides the NuRD components interact with CHD4 in the heart is controversial. Using quantitative proteomics, we identified that CHD4 interacts with SMYD1, a striated muscle-restricted histone methyltransferase that is essential for cardiomyocyte differentiation and cardiac morphogenesis. Comprehensive transcriptomic and chromatin accessibility studies of Smyd1 and Chd4 null embryonic mouse hearts revealed that SMYD1 and CHD4 repress a group of common genes and pathways involved in glycolysis, response to hypoxia, and angiogenesis. Our study reveals a mechanism by which CHD4 functions during heart development, and a previously uncharacterized mechanism regarding how SMYD1 represses cardiac transcription in the developing heart.

Indexed as

DNA-Binding ProteinsDNA HelicasesGene Expression Regulation, DevelopmentalHeartMi-2 Nucleosome Remodeling and Deacetylase ComplexMyocytes, CardiacTranscription FactorsAnimalsCell DifferentiationChromatinGlycolysisHistone-Lysine N-MethyltransferaseHumansMiceMice, KnockoutMuscle ProteinsCHD4 protein, humanChromatinDNA-Binding ProteinsDNA HelicasesHistone-Lysine N-MethyltransferaseMi-2beta protein, mouseMi-2 Nucleosome Remodeling and Deacetylase ComplexMuscle ProteinsSmyd1 protein, mouseTranscription FactorsCHD4Chromatin accessibilityMouseSMYD1Transcription

Identifiers

PMID38619323
PMCPMC11112163
OpenAlexW4394820252

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.