Evidence map›Paper›PMID 38619241›Full record

ArticlemBio2024

Using the pan-genomic framework for the discovery of genomic islands in the haloarchaeon

Yutian Feng, Danielle Arsenault, Artemis S Louyakis, Neta Altman-Price, Uri Gophna, R Thane Papke, Johann Peter Gogarten

Abstract read
In one paragraph

Article in mBio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Genomic insights intoScience progress
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yutian FengDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA.ORCID 0000-0003-3647-7292
Danielle ArsenaultDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA.
Artemis S LouyakisDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA.
Neta Altman-PriceThe Shmunis School of Biomedicine and Cancer Research, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.
Uri GophnaThe Shmunis School of Biomedicine and Cancer Research, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0001-5129-5652
R Thane PapkeDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA.
Johann Peter GogartenDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA.ORCID 0000-0001-6459-6518

Funding

National Science Foundation (NSF) 1716046The European Research Council (ERC) AdG 787514United States - Israel Binational Science Foundation (BSF) 2013061
6 · The paper itself

Abstract

In this study, we use pan-genomics to characterize the genomic variability of the widely dispersed halophilic archaeal species

Indexed as

Genome, ArchaealGenomic IslandsHalorubrumEvolution, MolecularGenetic VariationGenomicsPhylogenyhaloarchaeahomeoallelesislandspan-genome

Identifiers

PMID38619241
PMCPMC11078007

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.