Evidence map›Paper›PMID 38618952›Full record

ArticleThe Journal of clinical investigation2024

Von Hippel Lindau tumor suppressor controls m6A-dependent gene expression in renal tumorigenesis.

Cheng Zhang, Miaomiao Yu, Austin J Hepperla, Zhao Zhang, Rishi Raj, Hua Zhong, Jin Zhou, Lianxin Hu, Jun Fang, Hongyi Liu and 10 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 13 citations in OpenAlex.

  1. NAR cancer · 2026
    Article
  2. Review
  3. Beyond mBiomedicines · 2026
    Review
  4. Review
  5. Epitranscriptomic silencing of the ZC3H13/mJournal of experimental & clinical cancer research : CR · 2026
    Article
  6. Article
  7. Review
  8. Review
  9. mFrontiers in cell and developmental biology · 2026
    Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. METTL Family in Healthy and Disease.Molecular biomedicine · 2024
    Review
  18. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 1 country.

Cheng ZhangDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Miaomiao YuDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Austin J HepperlaLineberger Comprehensive Cancer Center, University of North Carolina (UNC) School of Medicine, Chapel Hill, North Carolina, USA.
Zhao ZhangDepartment of Molecular Medicine, Mays Cancer Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA.
Rishi RajDepartment of Biochemistry, Department of Biophysics, Simmons Comprehensive Cancer Center and.
Hua ZhongDepartment of Pathology, Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Jin ZhouDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Lianxin HuDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Jun FangDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Hongyi LiuDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Qian LiangDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Liwei JiaDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Chengheng LiaoDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Sichuan XiThoracic Epigenetics Section, Thoracic Surgery Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Jeremy M SimonLineberger Comprehensive Cancer Center, University of North Carolina (UNC) School of Medicine, Chapel Hill, North Carolina, USA.
Kexin XuDepartment of Molecular Medicine, Mays Cancer Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA.
Zhijie LiuDepartment of Molecular Medicine, Mays Cancer Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA.
Yunsun NamDepartment of Biochemistry, Department of Biophysics, Simmons Comprehensive Cancer Center and.
Payal KapurDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Qing ZhangDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
The University of Texas Southwestern Medical Center · USThe University of Texas Health Science Center at San Antonio · USSimmons University · USUniversity of North Carolina at Chapel Hill · USNational Cancer Institute · USSidney Kimmel Comprehensive Cancer Center · US

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Kathryn Ann O'Donnell · 2010 to 2026
$53.7M
Mechanisms of Microprocessor Function and RegulationR01GM122960 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI NAM, YUNSUN · 2017 to 2025
$3.2M
Exploration of ZHX2 as a novel substrate of pVHL and an oncogenic driver of renal cancerR01CA211732 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, QING · 2017 to 2021
$2.1M
Small molecules to target the RNA methyltransferase complex METTL3/METTL14R01CA258589 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI NAM, YUNSUN · 2022 to 2025
$1.7M
Mechanisms of enhancer dynamics and assembly in gene regulationR35GM153228 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Zhijie Liu · 2024 to 2026
$1.4M
NCI NIH HHS P30 CA142543NCI NIH HHS R01 CA211732NCI NIH HHS R01 CA258589NIGMS NIH HHS R01 GM122960NIGMS NIH HHS R35 GM153228
6 · The paper itself

Abstract

N6-Methyladenosine (m6A) is the most abundant posttranscriptional modification, and its contribution to cancer evolution has recently been appreciated. Renal cancer is the most common adult genitourinary cancer, approximately 85% of which is accounted for by the clear cell renal cell carcinoma (ccRCC) subtype characterized by VHL loss. However, it is unclear whether VHL loss in ccRCC affects m6A patterns. In this study, we demonstrate that VHL binds and promotes METTL3/METTL14 complex formation while VHL depletion suppresses m6A modification, which is distinctive from its canonical E3 ligase role. m6A RNA immunoprecipitation sequencing (RIP-Seq) coupled with RNA-Seq allows us to identify a selection of genes whose expression may be regulated by VHL-m6A signaling. Specifically, PIK3R3 is identified to be a critical gene whose mRNA stability is regulated by VHL in a m6A-dependent but HIF-independent manner. Functionally, PIK3R3 depletion promotes renal cancer cell growth and orthotopic tumor growth while its overexpression leads to decreased tumorigenesis. Mechanistically, the VHL-m6A-regulated PIK3R3 suppresses tumor growth by restraining PI3K/AKT activity. Taken together, we propose a mechanism by which VHL regulates m6A through modulation of METTL3/METTL14 complex formation, thereby promoting PIK3R3 mRNA stability and protein levels that are critical for regulating ccRCC tumorigenesis.

Indexed as

AdenineCarcinoma, Renal CellKidney NeoplasmsAdultCarcinogenesisCell Transformation, NeoplasticGene ExpressionHumansMethyltransferasesPhosphatidylinositol 3-KinasesVon Hippel-Lindau Tumor Suppressor Protein6-methyladenineAdenineMethyltransferasesMETTL3 protein, humanPhosphatidylinositol 3-KinasesPIK3R3 protein, humanVHL protein, humanVon Hippel-Lindau Tumor Suppressor ProteinOncologyTumor suppressors

Identifiers

PMID38618952
PMCPMC11014668
OpenAlexW4394792391

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.