Evidence map›Paper›PMID 38617218›Full record

ArticlebioRxiv : the preprint server for biology2024

Detection of clade 2.3.4.4b highly pathogenic H5N1 influenza virus in New York City.

Philip S Meade, Pooja Bandawane, Kaitlyn Bushfield, Irene Hoxie, Karla R Azcona, Daneidy Burgos, Sadia Choudhury, Adama Diaby, Mariama Diallo, Kailani Gaynor and 11 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors.

Philip S MeadeDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Pooja BandawaneDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Kaitlyn BushfieldDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Irene HoxieDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Karla R AzconaNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Daneidy BurgosNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Sadia ChoudhuryNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Adama DiabyNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Mariama DialloNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Kailani GaynorNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Aaron HuangNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Kadiatou KanteNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Shehryar N KhanNew York City Virus Hunters Program, BioBus, New York, NY, USA.
William KimNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Paul Kehinde AjayiNew York City Virus Hunters Program, BioBus, New York, NY, USA.
Ericka RoubidouxDepartment of Host Microbe Interactions, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Sasha NelsonAnimal Care Centers of New York, New York, NY, USA.
Rita McMahonWild Bird Fund, New York, NY, USA.
Randy A AlbrechtDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Florian KrammerDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Christine MarizziDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Funding

Strengthening the ISMMS research and response capabilities for pathogens of pandemic potentialG20AI174733 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ALBRECHT, RANDY A. · 2022 to 2022
$2.3M
NIAID NIH HHS G20 AI174733
6 · The paper itself

Abstract

Highly pathogenic avian influenza viruses of the H5N1 clade 2.3.4.4b arrived in North America in the winter of 2021/2022. These viruses have spread across the Americas causing morbidity and mortality in both wild and domestic birds as well as some mammalian species, including cattle. Many surveillance programs in wildlife as well as commercial poultry operations have detected these viruses. Here we conducted surveillance of avian species in the urban environment in New York City. We detected highly pathogenic H5N1 viruses in six samples from four different bird species and performed full genome sequencing. Sequence analysis showed the presence of multiple different genotypes. Our work highlights that the interface between animals and humans that may give rise to zoonotic infections or even pandemics is not limited to rural environments and commercial poultry operations but extends into the heart of our urban centers.

Identifiers

PMID38617218
PMCPMC11014507

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.