Evidence map›Paper›PMID 38615721›Full record

ArticleJournal of neuroscience methods2024

Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro.

Yousef Salimpour, William S Anderson, Raha Dastgheyb, Shiyu Liu, Guo-Li Ming, Hongjun Song, Nicholas J Maragakis, Christa W Habela

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Yousef SalimpourFunctional Neurosurgery Laboratory, Department of Neurosurgery, Johns Hopkins School of Medicine, Baltimore, Maryland, USA.
William S AndersonFunctional Neurosurgery Laboratory, Department of Neurosurgery, Johns Hopkins School of Medicine, Baltimore, Maryland, USA.
Raha DastgheybDepartment of Neurology, Johns Hopkins School of Medicine, Baltimore MD, USA.
Shiyu LiuDepartment of Neurology, Johns Hopkins School of Medicine, Baltimore MD, USA.
Guo-Li Ming1Department of Neuroscience and Mahoney Institute for Neurosciences, Perelman School of Medicine, Philadelphia, PA, USA.
Hongjun Song1Department of Neuroscience and Mahoney Institute for Neurosciences, Perelman School of Medicine, Philadelphia, PA, USA.
Nicholas J MaragakisDepartment of Neurology, Johns Hopkins School of Medicine, Baltimore MD, USA.
Christa W HabelaDepartment of Neurology, Johns Hopkins School of Medicine, Baltimore MD, USA. Electronic address: chabela1@jh.edu.

Funding

Child Neurologist Career Development Program (CNCDP)K12NS098482 · NINDS · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI SCHLAGGAR, BRADLEY L · 2016 to 2025
$26.2M
Continuous Neurogenesis in the Mammalian HippocampusR35NS116843 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI HONGJUN SONG · 2020 to 2026
$6.9M
Functional roles of genetic risk factors for brain disorders in neurogenesis and neurodevelopmentR35NS097370 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI MING, GUO-LI · 2017 to 2024
$6.7M
Modulating an Astrocyte Hemichannel to Delay Spatial and Temporal Progression in ALS.R01NS117604 · NINDS · JOHNS HOPKINS UNIVERSITY · PI MARAGAKIS, NICHOLAS J · 2020 to 2024
$1.9M
Modeling genetic risk for epilepsy using IPSC and animal models.K08NS102526 · NINDS · JOHNS HOPKINS UNIVERSITY · PI HABELA, CHRISTA · 2020 to 2024
$996k
NINDS NIH HHS K08 NS102526NINDS NIH HHS K12 NS098482NINDS NIH HHS R01 NS117604NINDS NIH HHS R35 NS097370NINDS NIH HHS R35 NS116843
6 · The paper itself

Abstract

backgroundHuman induced pluripotent stem cell (hiPSC)- derived neurons offer the possibility of studying human-specific neuronal behaviors in physiologic and pathologic states in vitro. It is unclear whether cultured neurons can achieve the fundamental network behaviors required to process information in the brain. Investigating neuronal oscillations and their interactions, as occurs in cross-frequency coupling (CFC), addresses this question. NEW

methodsWe examined whether networks of two-dimensional (2D) cultured hiPSC-derived cortical neurons grown with hiPSC-derived astrocytes on microelectrode array plates recapitulate the CFC that is present in vivo. We employed the modulation index method for detecting phase-amplitude coupling (PAC) and used offline spike sorting to analyze the contribution of single neuron spiking to network behavior.

resultsWe found that PAC is present, the degree of PAC is specific to network structure, and it is modulated by external stimulation with bicuculline administration. Modulation of PAC is not driven by single neurons, but by network-level interactions. COMPARISON WITH EXISTING

methodsPAC has been demonstrated in multiple regions of the human cortex as well as in organoids. This is the first report of analysis demonstrating the presence of coupling in 2D cultures.

conclusionCFC in the form of PAC analysis explores communication and integration between groups of neurons and dynamical changes across networks. In vitro PAC analysis has the potential to elucidate the underlying mechanisms as well as capture the effects of chemical, electrical, or ultrasound stimulation; providing insight into modulation of neural networks to treat nervous system disorders in vivo.

Indexed as

Induced Pluripotent Stem CellsMicroelectrodesNeuronsAction PotentialsAstrocytesBicucullineCell Culture TechniquesCells, CulturedCerebral CortexHumansNerve NetBicucullineCross-frequency couplingepilepsyhuman astrocytehuman neuronal cultureinduced pluripotent stem cells (iPSC)Multielectrode arrayParkinson's diseasePhase-amplitude coupling

Identifiers

PMID38615721
PMCPMC11351296

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.