Evidence map›Paper›PMID 38614865›Full record

ArticleEBioMedicine2024

Spatial and single-cell colocalisation analysis reveals MDK-mediated immunosuppressive environment with regulatory T cells in colorectal carcinogenesis.

Masahiro Hashimoto, Yasuhiro Kojima, Takeharu Sakamoto, Yuki Ozato, Yusuke Nakano, Tadashi Abe, Kiyotaka Hosoda, Hideyuki Saito, Satoshi Higuchi, Yuichi Hisamatsu and 33 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Differences in T-cell Densities and Neighborhood Patterns in Human Colorectal Adenomas and Sessile Serrated Lesions.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
    Article
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  20. NMolecular medicine reports · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 15 institutions in 1 country.

Masahiro HashimotoDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan; Department of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, 565-0871, Japan.
Yasuhiro KojimaDivision of Computational Bioscience, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.
Takeharu SakamotoDepartment of Cancer Biology, Institute of Biomedical Science, Kansai Medical University, Hirakata, 573-1010, Japan. Electronic address: sakamott@hirakata.kmu.ac.jp.
Yuki OzatoDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan; Department of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, 565-0871, Japan.
Yusuke NakanoDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan; Department of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, 565-0871, Japan.
Tadashi AbeDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan.
Kiyotaka HosodaDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan.
Hideyuki SaitoDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan; Department of General Surgical Science, Gastroenterological Surgery, Gunma University Graduate School of Medicine, Maebashi, 371-8511, Japan.
Satoshi HiguchiDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan; Department of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, 565-0871, Japan.
Yuichi HisamatsuDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan.
Takeo ToshimaDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan.
Yusuke YonemuraDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan.
Takaaki MasudaDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan.
Tsuyoshi HataDepartment of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, 565-0871, Japan.
Satoshi NagayamaDepartment of Surgery, Uji-Tokushukai Medical Center, Uji, 611-0041, Japan.
Koichi KagawaDepartment of Gastroenterology, Shin Beppu Hospital, Beppu, 874-8538, Japan.
Yasuhiro GotoDepartment of Gastroenterology, Shin Beppu Hospital, Beppu, 874-8538, Japan.
Mitsuaki UtouDepartment of Pathology, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan.
Ayako GamachiDepartment of Pathology, Oita Oka Hospital, Oita, 870-0192, Japan.
Kiyomi ImamuraLaboratory of Systems Genomics, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, 277-8561, Japan.
Yuta KuzeLaboratory of Systems Genomics, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, 277-8561, Japan.
Junko ZenkohLaboratory of Systems Genomics, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, 277-8561, Japan.
Ayako SuzukiLaboratory of Systems Genomics, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, 277-8561, Japan.
Kazuki TakahashiLaboratory of Molecular Medicine, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan.
Atsushi NiidaLaboratory of Molecular Medicine, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan.
Haruka HiroseDivision of Systems Biology, Nagoya University Graduate School of Medicine, Nagoya, 466-8550, Japan.
Shuto HayashiDivision of Systems Biology, Nagoya University Graduate School of Medicine, Nagoya, 466-8550, Japan.
Jun KosekiDivision of Systems Biology, Nagoya University Graduate School of Medicine, Nagoya, 466-8550, Japan.
Satoshi FukuchiDepartment of Gastroenterological Medicine, Almeida Memorial Hospital, Oita, 870-1195, Japan.
Kazunari MurakamiDepartment of Gastroenterology, Oita University Hospital, Yufu, 879-5593, Japan.
Tomoharu YoshizumiDepartment of Surgery and Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka, 812-8582, Japan.
Kenji KadomatsuDepartment of Biochemistry, Nagoya University Graduate School of Medicine, Nagoya, 466-8550, Japan.
Taro ToboDepartment of Pathology, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan.
Yoshinao OdaDepartment of Anatomic Pathology, Kyushu University Hospital, Fukuoka, 812-8582, Japan.
Mamoru UemuraDepartment of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, 565-0871, Japan.
Hidetoshi EguchiDepartment of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, 565-0871, Japan.
Yuichiro DokiDepartment of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, 565-0871, Japan.
Masaki MoriTokai University School of Medicine, Isehara, 259-1193, Japan.
Masanobu OshimaDivision of Genetics, Cancer Research Institute, Kanazawa University, Kanazawa, 920-1192, Japan.
Tatsuhiro ShibataLaboratory of Molecular Medicine, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan.
Yutaka SuzukiLaboratory of Systems Genomics, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, 277-8561, Japan.
Teppei ShimamuraDivision of Systems Biology, Nagoya University Graduate School of Medicine, Nagoya, 466-8550, Japan; Department of Computational and Systems Biology, Medical Research Insitute, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo 113-0034, Japan. Electronic address: shimamura@med.nagoya-u.ac.jp.
Koshi MimoriDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, 874-0838, Japan. Electronic address: mimori.koshi.791@m.kyushu-u.ac.jp.
Kyushu University Beppu Hospital · JPThe University of Tokyo · JPNagoya University · JPThe University of Osaka · JPBeppu Medical Center · JPAlmeida Memorial Hospital · JPGunma University · JPKanazawa University · JPKansai Medical University · JPKyushu University · JPKyushu University Hospital · JPOita University Hospital · JPSuita Tokushukai Hospital · JPTokai University · JPTokyo Medical and Dental University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCell-cell interaction factors that facilitate the progression of adenoma to sporadic colorectal cancer (CRC) remain unclear, thereby hindering patient survival.

methodsWe performed spatial transcriptomics on five early CRC cases, which included adenoma and carcinoma, and one advanced CRC. To elucidate cell-cell interactions within the tumour microenvironment (TME), we investigated the colocalisation network at single-cell resolution using a deep generative model for colocalisation analysis, combined with a single-cell transcriptome, and assessed the clinical significance in CRC patients.

findingsCRC cells colocalised with regulatory T cells (Tregs) at the adenoma-carcinoma interface. At early-stage carcinogenesis, cell-cell interaction inference between colocalised adenoma and cancer epithelial cells and Tregs based on the spatial distribution of single cells highlighted midkine (MDK) as a prominent signalling molecule sent from tumour epithelial cells to Tregs. Interaction between MDK-high CRC cells and SPP1+ macrophages and stromal cells proved to be the mechanism underlying immunosuppression in the TME. Additionally, we identified syndecan4 (SDC4) as a receptor for MDK associated with Treg colocalisation. Finally, clinical analysis using CRC datasets indicated that increased MDK/SDC4 levels correlated with poor overall survival in CRC patients.

interpretationMDK is involved in the immune tolerance shown by Tregs to tumour growth. MDK-mediated formation of the TME could be a potential target for early diagnosis and treatment of CRC.

fundingJapan Society for the Promotion of Science (JSPS) Grant-in-Aid for Science Research; OITA Cancer Research Foundation; AMED under Grant Number; Japan Science and Technology Agency (JST); Takeda Science Foundation; The Princess Takamatsu Cancer Research Fund.

Indexed as

Colorectal NeoplasmsMidkineSingle-Cell AnalysisT-Lymphocytes, RegulatoryTumor MicroenvironmentCarcinogenesisCell CommunicationFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansImmune ToleranceMaleTranscriptomeMDK protein, humanMidkineColorectal cancerImmune toleranceMDKSDC4Single-cell RNA sequencingSpatial transcriptomics

Identifiers

PMID38614865
PMCPMC11121171
OpenAlexW4394741578

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