Evidence map›Paper›PMID 38614087›Full record

ArticleStructure (London, England : 1993)2024

Cryo-EM structure of flagellotropic bacteriophage Chi.

Ravi R Sonani, Nathaniel C Esteves, Birgit E Scharf, Edward H Egelman

Open access · greenAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural basis of multimodal adsorption and infection initiation bybioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. mBio · 2026
    Article
  7. A dramatic protein fold switch powers a bactericidal nanomachine.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. TheJournal of virology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ravi R SonaniDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA 22903, USA.
Nathaniel C EstevesDepartment of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA.
Birgit E ScharfDepartment of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA. Electronic address: bscharf@vt.edu.
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA 22903, USA. Electronic address: egelman@virginia.edu.
University of Virginia · USVirginia Tech · US

Funding

Women's Oncology Program - WONP30CA044579 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Jay William FOX · 1987 to 2026
$72.1M
Cryo-EM of Helical Protein and Nucleoprotein Polymers at Near Atomic ResolutionR35GM122510 · NIGMS · UNIVERSITY OF VIRGINIA · PI EDWARD H. EGELMAN · 2017 to 2026
$7.3M
2024 Sensory Transduction in Microorganisms Gordon Research Conference and Gordon Research SeminarR13AI181372 · NIAID · GORDON RESEARCH CONFERENCES · PI SCHARF, BIRGIT E · 2024 to 2024
$7k
NCI NIH HHS P30 CA044579NIAID NIH HHS R13 AI181372NIGMS NIH HHS R35 GM122510
6 · The paper itself

Abstract

The flagellotropic bacteriophage χ (Chi) infects bacteria via the flagellar filament. Despite years of study, its structural architecture remains partly characterized. Through cryo-EM, we unveil χ's nearly complete structure, encompassing capsid, neck, tail, and tail tip. While the capsid and tail resemble phage YSD1, the neck and tail tip reveal new proteins and their arrangement. The neck shows a unique conformation of the tail tube protein, forming a socket-like structure for attachment to the neck. The tail tip comprises four proteins, including distal tail protein (DTP), two baseplate hub proteins (BH1P and BH2P), and tail tip assembly protein (TAP) exhibiting minimal organization compared to other siphophages. Deviating from the consensus in other siphophages, DTP in χ forms a trimeric assembly, reducing tail symmetry from 6-fold to 3-fold at the tip. These findings illuminate the previously unexplored structural organization of χ's neck and tail tip.

Indexed as

Cryoelectron MicroscopyModels, MolecularBacteriophagesCapsidCapsid ProteinsProtein ConformationProtein MultimerizationViral Tail ProteinsCapsid ProteinsViral Tail Proteins

Identifiers

PMID38614087
PMCPMC11246221
OpenAlexW4394748926

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.