Evidence map›Paper›PMID 38613652›Full record

ArticleFood and environmental virology2024

Water-Based Epidemiological Investigation of Hepatitis E Virus in South Africa.

Karabo Salemane, Leanne Z Coetzee, Gina Pocock, Bettina Genthe, Maureen B Taylor, Janet Mans

Abstract read
In one paragraph

Article in Food and environmental virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Environmental surveillance of pathogens in Africa.Applied and environmental microbiology · 2026
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Karabo SalemaneDepartment of Medical Virology, School of Medicine, Faculty of Health Sciences, University of Pretoria, Private Bag X323, Gezina, Pretoria, 0031, South Africa.ORCID 0000-0002-8557-2790
Leanne Z Coetzee, Waterlab, Techno Park, 23B De Havilland Cres, Persequor, Pretoria, 0020, South Africa.ORCID 0009-0008-5116-8416
Gina Pocock, Waterlab, Techno Park, 23B De Havilland Cres, Persequor, Pretoria, 0020, South Africa.ORCID 0000-0001-7608-6566
Bettina GentheStellenbosch University, Private Bag X1, Matieland, Stellenbosch, 7602, South Africa.ORCID 0000-0002-1720-5593
Maureen B TaylorDepartment of Medical Virology, School of Medicine, Faculty of Health Sciences, University of Pretoria, Private Bag X323, Gezina, Pretoria, 0031, South Africa.ORCID 0000-0002-2780-5795
Janet MansDepartment of Medical Virology, School of Medicine, Faculty of Health Sciences, University of Pretoria, Private Bag X323, Gezina, Pretoria, 0031, South Africa. janet.mans@up.ac.za.ORCID 0000-0001-6721-1177

Funding

Department of Science and Innovation, South Africa DSI/CON 0095/2020Poliomyelitis Research Foundation 21/43 (Bursary)Poliomyelitis Research Foundation 21/74 (Grant)Water Research Commission C2020/2021-00686
6 · The paper itself

Abstract

Hepatitis E virus (HEV) is an emerging zoonotic pathogen that exhibits great host diversity. The primary means of transmission of the virus in low- and middle-income countries is contaminated water, often due to a lack of access to proper sanitation, which leads to faecal contamination of water sources. Environmental surveillance is an important tool that can be used to monitor virus circulation and as an early warning system for outbreaks. This study was conducted to determine the prevalence and genetic diversity of HEV in wastewater, surface water (rivers and standpipe/ablution water), and effluent from a piggery in South Africa. A total of 536 water samples were screened for HEV using real-time reverse transcription-polymerase chain reaction. Overall, 21.8% (117/536) of the wastewater, river, and ablution water samples tested positive for HEV, whereas 74.4% (29/39) of the samples from the piggery tested positive. Genotyping revealed sequences belonging to HEV genotypes 3 (98%, 53/54) and 4 (2%, 1/54), with subtypes 3c, 3f, and 4b being identified.

Indexed as

GenotypeHepatitis EHepatitis E virusPhylogenyWastewaterAnimalsGenetic VariationHumansRiversSouth AfricaSwineWater MicrobiologyWastewaterGenotypingHEVPiggerySurface WaterWastewater

Identifiers

PMID38613652
PMCPMC11422423

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.