Evidence map›Paper›PMID 38613387›Full record

ArticleNucleic acids research2024

Cdc13 exhibits dynamic DNA strand exchange in the presence of telomeric DNA.

David G Nickens, Zhitong Feng, Jiangchuan Shen, Spencer J Gray, Robert H Simmons, Hengyao Niu, Matthew L Bochman

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

David G NickensMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN 47405, USA.
Zhitong FengMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN 47405, USA.
Jiangchuan ShenMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN 47405, USA.
Spencer J GrayMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN 47405, USA.
Robert H SimmonsMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN 47405, USA.
Hengyao NiuMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN 47405, USA.
Matthew L BochmanMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN 47405, USA.ORCID 0000-0002-2807-0452
Indiana University Bloomington · US

Funding

DNA helicases and associated factors in genome stabilityR35GM133437 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BOCHMAN, MATTHEW LINNE · 2019 to 2023
$2.4M
NIGMS NIH HHS R35 GM133437NIH HHS R35GM133437
6 · The paper itself

Abstract

Telomerase is the enzyme that lengthens telomeres and is tightly regulated by a variety of means to maintain genome integrity. Several DNA helicases function at telomeres, and we previously found that the Saccharomyces cerevisiae helicases Hrq1 and Pif1 directly regulate telomerase. To extend these findings, we are investigating the interplay between helicases, single-stranded DNA (ssDNA) binding proteins (ssBPs), and telomerase. The yeast ssBPs Cdc13 and RPA differentially affect Hrq1 and Pif1 helicase activity, and experiments to measure helicase disruption of Cdc13/ssDNA complexes instead revealed that Cdc13 can exchange between substrates. Although other ssBPs display dynamic binding, this was unexpected with Cdc13 due to the reported in vitro stability of the Cdc13/telomeric ssDNA complex. We found that the DNA exchange by Cdc13 occurs rapidly at physiological temperatures, requires telomeric repeat sequence DNA, and is affected by ssDNA length. Cdc13 truncations revealed that the low-affinity binding site (OB1), which is distal from the high-affinity binding site (OB3), is required for this intermolecular dynamic DNA exchange (DDE). We hypothesize that DDE by Cdc13 is the basis for how Cdc13 'moves' at telomeres to alternate between modes where it regulates telomerase activity and assists in telomere replication.

Indexed as

DNA HelicasesDNA, Single-StrandedSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTelomereTelomere-Binding ProteinsBinding SitesDNA-Binding ProteinsDNA, FungalProtein BindingRecQ HelicasesReplication Protein ATelomeraseCdc13 protein, S cerevisiaeDNA-Binding ProteinsDNA, FungalDNA HelicasesDNA, Single-StrandedHrq1 protein, S cerevisiaePIF1 protein, S cerevisiaeRecQ HelicasesReplication Protein ARFA1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTelomeraseTelomere-Binding Proteins

Identifiers

PMID38613387
PMCPMC11194072
OpenAlexW4394786000

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.