Evidence map›Paper›PMID 38612769›Full record

ArticleInternational journal of molecular sciences2024

Cryo-EM Map Anisotropy Can Be Attenuated by Map Post-Processing and a New Method for Its Estimation.

Ruben Sanchez-Garcia, Guillaume Gaullier, Jose Manuel Cuadra-Troncoso, Javier Vargas

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ruben Sanchez-GarciaDepartment of Statistics, University of Oxford, 24-29 St Giles', Oxford OX1 3LB, UK.ORCID 0000-0001-6156-3542
Guillaume GaullierDepartment of Chemistry-Ångström, Uppsala University, Box 523, SE 751 20 Uppsala, Sweden.ORCID 0000-0003-3405-6021
Jose Manuel Cuadra-TroncosoDepartamento de Inteligencia Artificial, Universidad Nacional de Educación a Distancia, C. Juan del Rosal 16, 28040 Madrid, Spain.ORCID 0000-0003-3616-0404
Javier VargasDepartamento de Óptica, Universidad Complutense de Madrid, Plaza de Ciencias 1, 28040 Madrid, Spain.ORCID 0000-0001-7519-6106

Funding

Ministerio de Ciencia e Innovación PID2022-137548OB-I00 funded by MCIN/AEI/10.13039/501100011033/ and by ERDF A way of making Europe
6 · The paper itself

Abstract

One of the most important challenges in cryogenic electron microscopy (cryo-EM) is the substantial number of samples that exhibit preferred orientations, which leads to an uneven coverage of the projection sphere. As a result, the overall quality of the reconstructed maps can be severely affected, as manifested by the presence of anisotropy in the map resolution. Several methods have been proposed to measure the directional resolution of maps in tandem with experimental protocols to address the problem of preferential orientations in cryo-EM. Following these works, in this manuscript we identified one potential limitation that may affect most of the existing methods and we proposed an alternative approach to evaluate the presence of preferential orientations in cryo-EM reconstructions. In addition, we also showed that some of the most recently proposed cryo-EM map post-processing algorithms can attenuate map anisotropy, thus offering alternative visualization opportunities for cases affected by moderate levels of preferential orientations.

Indexed as

AlgorithmsAnisotropyCryoelectron Microscopyalgorithmscryo-EMmap anisotropypost-processingpreferred orientations

Identifiers

PMID38612769
PMCPMC11012471

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.