Evidence map›Paper›PMID 38611475›Full record

ArticlePlants (Basel, Switzerland)2024

Transcriptomic Profiling of Two Rice Thermo-Sensitive Genic Male Sterile Lines with Contrasting Seed Storability after Artificial Accelerated Aging Treatment.

Fan Li, Hongbing Ye, Yingfeng Wang, Jieqiang Zhou, Guilian Zhang, Xiong Liu, Xuedan Lu, Feng Wang, Qiuhong Chen, Guihua Chen and 3 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plants (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 98% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Fan LiCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Hongbing YeCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Yingfeng WangCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.ORCID 0009-0009-5741-331X
Jieqiang ZhouCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Guilian ZhangCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Xiong LiuCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Xuedan LuCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.ORCID 0000-0001-7046-9101
Feng WangCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Qiuhong ChenCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Guihua ChenCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Yunhua XiaoCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.ORCID 0000-0003-0488-0781
Wenbang TangCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Huabing DengCollege of Agronomy, Hunan Agricultural University, Changsha 410128, China.
Hunan Rice Research Institute · CNChina National Hybrid Rice R&D Central Hunan Hybrid Rice Reserch Center · CN

Funding

National Natural Science Foundation of China No. 32172078Science and Technology Innovation Program of Hunan Province No.2021JC0007Science and Technology Innovation Program of Hunan Province No.2021NK1001Science and Technology Innovation Program of Hunan Province No. 2022JJ30285Science and Technology Innovation Program of Hunan Province No.2023NK1010
6 · The paper itself

Abstract

Seed storability has a significant impact on seed vitality and is a crucial genetic factor in maintaining seed value during storage. In this study, RNA sequencing was used to analyze the seed transcriptomes of two rice thermo-sensitive genic male sterile (TGMS) lines, S1146S (storage-tolerant) and SD26S (storage-susceptible), with 0 and 7 days of artificial accelerated aging treatment. In total, 2658 and 1523 differentially expressed genes (DEGs) were identified in S1146S and SD26S, respectively. Among these DEGs, 729 (G1) exhibited similar regulation patterns in both lines, while 1924 DEGs (G2) were specific to S1146S, 789 DEGs (G3) were specific to SD26S, and 5 DEGs (G4) were specific to contrary differential expression levels. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that "translation", "ribosome", "oxidative phosphorylation", "ATP-dependent activity", "intracellular protein transport", and "regulation of DNA-templated transcription" were significantly enriched during seed aging. Several genes, like

Indexed as

artificially accelerated aging treatmentOryza sativa L.seed storabilityTGMS linetranscriptome analysis

Identifiers

PMID38611475
PMCPMC11013862
OpenAlexW4393146100

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.