Evidence map›Paper›PMID 38609393›Full record

ArticleNature communications2024

Epidemiological, clinical, and genomic landscape of coccidioidomycosis in northeastern Brazil.

Kelsen Dantas Eulálio, Daniel R Kollath, Liline Maria Soares Martins, Antonio de Deus Filho, Maria do Amparo Salmito Cavalcanti, Lucas Machado Moreira, Bernardo Guerra Tenório, Lucas Gomes de Brito Alves, Danielle Yamauchi, Ligia Vizeu Barrozo and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. From soil to clinic: current advances in understandingMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  6. Occurrence of coccidioidomycosis in a tertiary hospital in the Brazilian semi-arid region: diagnostic challenges.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 3 countries.

Kelsen Dantas EulálioHospital de Doenças Infecto Contagiosas-HDIC, Federal University of Piauí-UFPI, Teresina, Piauí, Brazil.
Daniel R KollathThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.ORCID http://orcid.org/0000-0002-2431-3453
Liline Maria Soares MartinsHospital de Doenças Infecto Contagiosas-HDIC, Federal University of Piauí-UFPI, Teresina, Piauí, Brazil.
Antonio de Deus FilhoHospital de Doenças Infecto Contagiosas-HDIC, Federal University of Piauí-UFPI, Teresina, Piauí, Brazil.
Maria do Amparo Salmito CavalcantiHospital de Doenças Infecto Contagiosas-HDIC, Federal University of Piauí-UFPI, Teresina, Piauí, Brazil.
Lucas Machado MoreiraEvandro Chagas National Institute of Infectology, Fiocruz - RJ, Rio de Janeiro, Brazil.ORCID http://orcid.org/0000-0002-8084-7513
Bernardo Guerra TenórioFaculty of Medicine, University of Brasília, Brasília, Federal District, Brazil.
Lucas Gomes de Brito AlvesFaculty of Medicine, University of Brasília, Brasília, Federal District, Brazil.
Danielle YamauchiDepartamento de Microbiologia e Imunologia, Instituto de Biociências de Botucatu, Universidade Estadual Paulista/UNESP, Botucatu, Brazil.
Ligia Vizeu BarrozoDepartment of Geography, Faculty of Philosophy, Languages and Literature, and Human Sciences, University of São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0001-7322-6789
George R Thompson IiiDepartment of Internal Medicine, Division of Infectious Diseases and Department of Medical Microbiology and Immunology, UC-Davis, Sacramento, CA, USA.
Mathieu NacherCentre d'Investigations Cliniques, INSERM 1424, Centre hospitalier de Cayenne - French Guiana, Cayenne, French Guiana.ORCID http://orcid.org/0000-0001-9397-3204
Jason E StajichDepartment of Microbiology and Plant Pathology University of California-Riverside, Riverside, CA, USA.ORCID http://orcid.org/0000-0002-7591-0020
Gil BenardLaboratório de Micologia Medica, Departamento de Dermatologia, Instituto de Medicina Tropical, Faculdade de Medicina, University of São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-5469-3602
Eduardo BagagliDepartamento de Microbiologia e Imunologia, Instituto de Biociências de Botucatu, Universidade Estadual Paulista/UNESP, Botucatu, Brazil.
Maria Sueli Soares FelipeUniversidade Católica de Brasília, Brasília, Brazil.
Bridget M BarkerThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.ORCID http://orcid.org/0000-0002-3439-4517
Luciana TrillesEvandro Chagas National Institute of Infectology, Fiocruz - RJ, Rio de Janeiro, Brazil.
Marcus de Melo TeixeiraThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. marcus.teixeira@gmail.com.ORCID http://orcid.org/0000-0003-1763-3464
Universidade Federal do Piauí · BRUniversidade de Brasília · BRInstituto Evandro Chagas · BRNorthern Arizona University · USUniversidade de São Paulo · BRUniversidade Estadual Paulista (Unesp) · BRCentre Hospitalier Andrée Rosemon · GFUniversidade Católica de Brasília · BRUniversity of California, Davis · USUniversity of California, Riverside · US

Funding

Early in vivo Expressed Antigens and their Role in Virulence, Immune Response, and Vaccines for CoccidioidomycosisU19AI166058 · NIAID · NORTHERN ARIZONA UNIVERSITY · PI Bridget Marie Barker · 2022 to 2026
$12.1M
Virulence gene discovery in CoccidioidesU19AI166798 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Satya Dandekar · 2022 to 2026
$10.5M
Evolution of Aspergillus fumigatus virulenceR01AI130128 · NIAID · DARTMOUTH COLLEGE · PI Robert Andrew Cramer · 2017 to 2026
$4.5M
Evolved Heterogeneity Contributes to Chronic Fungal Lung InfectionsR01AI127548 · NIAID · DARTMOUTH COLLEGE · PI HOGAN, DEBORAH A · 2017 to 2025
$3.9M
NIAID NIH HHS R01 AI127548NIAID NIH HHS R01 AI130128NIAID NIH HHS U19 AI166058NIAID NIH HHS U19 AI166798
6 · The paper itself

Abstract

Coccidioidomycosis, listed as a priority mycosis by the WHO, is endemic in the United States but often overlooked in Central and South America. Employing a multi-institutional approach, we investigate how disease characteristics, pathogen genetic variation, and environmental factors impact coccidioidomycosis epidemiology and outcomes in South America. We identified 292 cases (1978-2021) and 42 outbreaks in Piauí and Maranhão states, Brazil, the largest series outside the US/Mexico epidemic zone. The male-to-female ratio was 57.4:1 and the most common activity was armadillo hunting (91.1%) 4 to 30 days before symptom onset. Most patients (92.8%) exhibited typical acute pulmonary disease, with cough (93%), fever (90%), and chest pain (77%) as predominant symptoms. The case fatality rate was 8%. Our negative binomial regression model indicates that reduced precipitation levels in the current (p = 0.015) and preceding year (p = 0.001) predict heightened incidence. Unlike other hotspots, acidic soil characterizes this region. Brazilian strains differ genomically from other C. posadasii lineages. Northeastern Brazil presents a distinctive coccidioidomycosis profile, with armadillo hunters facing elevated risks. Low annual rainfall emerges as a key factor in increasing cases. A unique C. posadasii lineage in Brazil suggests potential differences in environmental, virulence, and/or pathogenesis traits compared to other Coccidioides genotypes.

Indexed as

CoccidioidomycosisAnimalsArmadillosBrazilFemaleGenomicsGenotypeHumansMale

Identifiers

PMID38609393
PMCPMC11014852
OpenAlexW4394766854

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.